pycom08g16240

Mini-chromosome maintenance complex-binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
16121505 .. 16122111
607 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGGAGCCTGATGTCGAGAGTGATTTGCTTCCTTGTCTTATTAAGATATATGGTTGTCTGGAGTTTGACTTAAAGCTAAATGAGGTTTTTGAGTTTTTTGGAGTCTTCACTTTCGATTCAGAGTTTAAAGAGGACAAGGATGCATCAAATGATTTCACAAATGGTTTTAGCGAAGATGTGTTGGTTCACTTGCCCCCTAATAAGACTAAATTTTGCATGTTTGGTTCTGTACATAAGTACATACATTTTTATACTTTTTTTTTTTGTTTCACATTTTTCCCTTGGTGCAAGTACCACGTCTCCATTGTTTTATTCACAAGAAACTTGCAGTTCACGACTTCCTTCCTTGTTCCCCTCCAATCACAGGAAACTTGGACTTCTATGCATGTCTGCGTGTGTATATGCAAACCTGGGATCTCTAAATTTCCGCACTTCCGCATCCTTCCCTTAATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.89

Weight (kDa)

5.6

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCM_bind PF09739 8 - 68 3.1e-11 Mini-chromosome maintenance replisome factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 428, 436
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 2 cut(s) 209, 422
AfaI GTAC 3 cut(s) 231, 239, 293
AfiI CCNNNNNNNGG 1 cut(s) 364
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 209, 422
BbsI GAAGAC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 3 cut(s) 130, 152, 447
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 281, 410
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 281, 410
BseGI GGATG 2 cut(s) 145, 438
BseLI CCNNNNNNNGG 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 2 cut(s) 428, 436
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 281, 410
BssMI GATC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 145, 438
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 1 cut(s) 414
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 2 cut(s) 220, 389
BstSCI CCNGG 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 145, 438
Csp6I GTAC 3 cut(s) 230, 238, 292
CviAII CATG 2 cut(s) 217, 386
CviJI RGCY 2 cut(s) 7, 76
CviKI_1 RGCY 2 cut(s) 7, 76
CviQI GTAC 3 cut(s) 230, 238, 292
DdeI CTNAG 1 cut(s) 456
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
DraI TTTAAA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 2 cut(s) 145, 387
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 2 cut(s) 220, 389
FatI CATG 2 cut(s) 216, 385
FokI GGATG 2 cut(s) 152, 425
GsuI CTGGAG 1 cut(s) 80
Hin1II CATG 2 cut(s) 220, 389
HinfI GANTC 2 cut(s) 102, 116
Hpy166II GTNNAC 2 cut(s) 187, 333
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 16, 59, 334
Hpy8I GTNNAC 2 cut(s) 187, 333
HpyAV CCTTC 2 cut(s) 352, 452
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 6 cut(s) 143, 216, 288, 328, 385, 405
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 2 cut(s) 220, 389
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 21, 44, 350, 396, 423
LweI GCATC 3 cut(s) 130, 152, 447
MaeII ACGT 1 cut(s) 297
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 2 cut(s) 97, 185
MflI RGATCY 1 cut(s) 414
MluCI AATT 3 cut(s) 209, 422, 450
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 3 cut(s) 76, 124, 365
Mph1103I ATGCAT 2 cut(s) 145, 387
MseI TTAA 4 cut(s) 42, 71, 126, 449
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
NdeII GATC 1 cut(s) 414
NlaIII CATG 2 cut(s) 220, 389
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 2 cut(s) 145, 387
NspI RCATGY 2 cut(s) 220, 389
PfeI GAWTC 1 cut(s) 116
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 3 cut(s) 231, 239, 293
RsaNI GTAC 3 cut(s) 230, 238, 292
SaqAI TTAA 4 cut(s) 42, 71, 126, 449
Sau3AI GATC 1 cut(s) 414
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 411
SetI ASST 4 cut(s) 78, 87, 300, 412
SfaNI GCATC 3 cut(s) 130, 152, 447
Sse9I AATT 3 cut(s) 209, 422, 450
SsiI CCGC 2 cut(s) 428, 436
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 281
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 15, 114
TasI AATT 3 cut(s) 209, 422, 450
TatI WGTACW 2 cut(s) 229, 237
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 4 cut(s) 42, 71, 126, 449
Tru9I TTAA 4 cut(s) 42, 71, 126, 449
XapI RAATTY 2 cut(s) 209, 422
XceI RCATGY 2 cut(s) 220, 389
Zsp2I ATGCAT 2 cut(s) 145, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.