Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16451503 .. 16452640

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCTGACAAGGGATGTTTCTGTACGGATAACAGCAGATGAAGTACTAAGGCATCCATGGATATTGTTTTATACTGAGCGAACACTCAAGGCACTACCCATTAAATCAAGATTGAAGAACCAAGCAGGAGAACCATCTCGCCAGCTTGTCATTCCACCTAGACTTAAGGCGTGTCTAAACCAGTCAGAAGATGGCTCTCTCAGTGAAACTTCAGGTCTCCTTTCGTCTTCTGATAGCTGCAAGTCAGAAGATGATGACGATTCTGGTTTAGTGGACGCACTTGCCACTGCAGTTTCACATGTGAGAATTTCTGAACCTAAACGGAGCAGGGTATGCGGTCCAACAGGTCGTCCAATCAAGCAGCAGTGTTCATCTAACATGAAAGCTAACAACCTCTGTAAAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

137

Amino Acids

14.94

Weight (kDa)

8.91

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	24, 45
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	3 cut(s)	145, 237, 386
AluI	AGCT	3 cut(s)	145, 237, 386
Alw26I	GTCTC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	237, 361
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	224, 373
BccI	CCATC	2 cut(s)	142, 185
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	238, 362
BlsI	GCNGC	2 cut(s)	239, 363
BmcAI	AGTACT	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	19, 52
BseMII	CTCAG	2 cut(s)	66, 214
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	224, 373
BsmAI	GTCTC	1 cut(s)	221
Bso31I	GGTCTC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	67, 213
BspMAI	CTGCAG	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	47, 75, 200
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	19, 52
BstMAI	GTCTC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	224, 373
BstV2I	GAAGAC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	19, 52
BtsI	GCAGTG	2 cut(s)	285, 371
BtsIMutI	CAGTG	3 cut(s)	208, 285, 371
Cac8I	GCNNGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	23, 44
CviAII	CATG	3 cut(s)	57, 299, 379
CviJI	RGCY	4 cut(s)	145, 195, 237, 386
CviKI_1	RGCY	4 cut(s)	145, 195, 237, 386
CviQI	GTAC	2 cut(s)	23, 44
DdeI	CTNAG	3 cut(s)	47, 75, 200
Eco130I	CCWWGG	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	60, 302, 382
FaiI	YATR	5 cut(s)	58, 72, 300, 334, 380
FatI	CATG	3 cut(s)	56, 298, 378
Fnu4HI	GCNGC	2 cut(s)	238, 362
FokI	GGATG	2 cut(s)	26, 39
Fsp4HI	GCNGC	2 cut(s)	238, 362
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	238, 362
HgaI	GACGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	60, 302, 382
HinfI	GANTC	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	4 cut(s)	187, 232, 247, 313
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	240, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	3 cut(s)	47, 75, 200
Hsp92II	CATG	3 cut(s)	60, 302, 382
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	111, 155, 194, 198, 249, 313, 330
Lsp1109I	GCAGC	2 cut(s)	224, 373
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	159
MboII	GAAGA	4 cut(s)	127, 200, 219, 260
MluCI	AATT	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	1 cut(s)	404
MseI	TTAA	2 cut(s)	102, 165
MspCI	CTTAAG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	56
NlaIII	CATG	3 cut(s)	60, 302, 382
NspI	RCATGY	1 cut(s)	302
PciI	ACATGT	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	239, 363
PscI	ACATGT	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	24, 45
RsaNI	GTAC	2 cut(s)	23, 44
SaqAI	TTAA	2 cut(s)	102, 165
SatI	GCNGC	2 cut(s)	238, 362
Sau96I	GGNCC	1 cut(s)	338
ScaI	AGTACT	1 cut(s)	45
SetI	ASST	8 cut(s)	147, 160, 217, 239, 319, 349, 388, 396
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	86, 164
SmoI	CTYRAG	2 cut(s)	86, 164
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	56
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	102, 165
Tru9I	TTAA	2 cut(s)	102, 165
TscAI	CASTG	3 cut(s)	208, 292, 371
TseI	GCWGC	2 cut(s)	237, 361
TspDTI	ATGAA	3 cut(s)	54, 360, 395
TspGWI	ACGGA	2 cut(s)	40, 337
TspRI	CASTG	3 cut(s)	208, 292, 371
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.