Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16954700 .. 16955587

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAATGCAGCATTTTCTGGTCACTACGTGTGCTATGTCAGGAATTCCCACAACAAGTGGTTCAAGGTTGATGACAGCACGGTAACCCCTGTGGAACTTGAAAAGGTCTTGACAAAAGGCGCTTACATGCTTCTTTATTCAAGATGCTTGCCAAGGGCCCCGAGATTGATAAGGAACAGAATTATATCTAATGATCGACCAAACATCGAGCCATTCCTTCTTGGATCGGTGGAAAGGCTACCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

83

Amino Acids

9.48

Weight (kDa)

9.62

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	6 - 46	5.4e-11	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	64, 101, 141
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	156
ApaI	GGGCCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	156, 157
AvaI	CYCGRG	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	156, 157
BmiI	GGNNCC	2 cut(s)	158, 159
BmsI	GCATC	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	160
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	193, 224
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	158, 159
BspPI	GGATC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	193, 224
BssT1I	CCWWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	149
BstEII	GGTNACC	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	2 cut(s)	196, 227
BstMBI	GATC	2 cut(s)	193, 224
BstNSI	RCATGY	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	156, 157
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	3 cut(s)	158, 211, 238
CviKI_1	RGCY	3 cut(s)	158, 211, 238
DpnI	GATC	2 cut(s)	195, 226
DpnII	GATC	2 cut(s)	193, 224
DraIII	CACNNNGTG	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	156, 157
EcoO65I	GGTNACC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	130
FaiI	YATR	3 cut(s)	36, 128, 185
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	40, 109, 141
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	193, 224
LpnPI	CCDG	3 cut(s)	3, 25, 102
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	134
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	20, 82
MalI	GATC	2 cut(s)	195, 226
MboI	GATC	2 cut(s)	193, 224
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	43, 180
Mva1269I	GAATGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	193, 224
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	158, 159
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	130
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	158, 159
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	156, 157
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	193, 224
Sau96I	GGNCC	2 cut(s)	156, 157
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	3 cut(s)	30, 69, 108
SfaNI	GCATC	1 cut(s)	134
Sse9I	AATT	2 cut(s)	43, 180
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	196, 207
TasI	AATT	2 cut(s)	43, 180
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.