pycom08g17410

BEACH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
17607619 .. 17607813
195 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGAATTCACTCGAGGTCATAAAGAAATATGATGGTGTAGGAAAGATTATAACATCTCTAACGGTGACTCCAGAAGAATGCTTCTTAGCTGGAACAAAAGATGGAACCATTCTTGTATATTCTATAGAAAATACTCAACTTCGCAAAGCTACTGTTCCTCGAAATTCAAAATCCAAACCGTCTTCAACAGGATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

65

Amino Acids

6.92

Weight (kDa)

9.25

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NBCH_WD40 PF20426 1 - 50 3e-23 Neurobeachin beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AcsI RAATTY 2 cut(s) 4, 163
AgsI TTSAA 2 cut(s) 168, 186
AluBI AGCT 2 cut(s) 89, 149
AluI AGCT 2 cut(s) 89, 149
Ama87I CYCGRG 1 cut(s) 11
ApoI RAATTY 2 cut(s) 4, 163
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 2 cut(s) 26, 95
BfmI CTRYAG 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
BsiHKCI CYCGRG 1 cut(s) 11
BsmI GAATGC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 64, 154, 180
BstDEI CTNAG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 174
CviJI RGCY 2 cut(s) 89, 149
CviKI_1 RGCY 2 cut(s) 89, 149
DdeI CTNAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 4
FaiI YATR 5 cut(s) 20, 30, 50, 118, 125
GsuI CTGGAG 1 cut(s) 54
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4III ACNGT 3 cut(s) 64, 154, 180
HpyF3I CTNAG 1 cut(s) 85
LpnPI CCDG 3 cut(s) 75, 84, 174
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 2 cut(s) 86, 174
MluCI AATT 2 cut(s) 4, 163
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 2 cut(s) 7, 168
Mva1269I GAATGC 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 11
PctI GAATGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PsiI TTATAA 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 106
PspXI VCTCGAGB 1 cut(s) 11
SchI GAGTC 1 cut(s) 61
SetI ASST 3 cut(s) 18, 91, 151
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 11
SgeI CNNG 6 cut(s) 23, 25, 83, 102, 125, 171
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 4, 163
TaaI ACNGT 3 cut(s) 64, 154, 180
TaqI TCGA 2 cut(s) 12, 160
TasI AATT 2 cut(s) 4, 163
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 4, 163
XhoI CTCGAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.