Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17676391 .. 17680123

Gene Structure 3733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTAAATCTTTTGCCGAGCAATGAAGTGATTTGTGACCTTGACCGGGATTACAAGGATGTTGGTGTTGCTCAGTTTACAACAAAAAATTTTGTTGTCAGAAACTGCCTGCCAAATGCCAAGTCAGATATGCTTTTATCAGCATGGAATCCTCCTAATGAATGGCGAAAGGAAGTTTTGCTTCGCGTGGATGCAAAGCAAGGAGCTCCTAAGGATGGAAATTCTTCTCTTGAACGTTTTCAGGTAGAGATCTATCCAGTCTCAAGATTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

6.2

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hobbit	PF10344	11 - 87	3.8e-25	Hobbit/FMP27/BTLP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AclI	AACGTT	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	88, 220
AfiI	CCNNNNNNNGG	2 cut(s)	46, 215
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	88, 220
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	2 cut(s)	223, 237
AsuC2I	CCSGG	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 215
Bse1I	ACTGG	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	28
BseGI	GGATG	3 cut(s)	64, 196, 220
BseLI	CCNNNNNNNGG	2 cut(s)	46, 215
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	46, 215
BsmAI	GTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	72, 210
BstF5I	GGATG	3 cut(s)	64, 196, 220
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	64, 196, 220
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	105
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	1 cut(s)	206
CviKI_1	RGCY	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	72, 210
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	1 cut(s)	147
FaiI	YATR	2 cut(s)	131, 145
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	1 cut(s)	143
FokI	GGATG	3 cut(s)	71, 203, 227
FriOI	GRGCYC	1 cut(s)	208
HapII	CCGG	1 cut(s)	46
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	2 cut(s)	148, 267
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	101, 127
Hpy188III	TCNNGA	2 cut(s)	230, 264
Hpy8I	GTNNAC	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	72, 210
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	203, 211
LpnPI	CCDG	4 cut(s)	59, 122, 227, 270
LweI	GCATC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	216
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	88, 220
MnlI	CCTC	1 cut(s)	162
MroXI	GAANNNNTTC	2 cut(s)	223, 237
MseI	TTAA	1 cut(s)	274
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	223, 237
PfeI	GAWTC	2 cut(s)	148, 267
Psp124BI	GAGCTC	1 cut(s)	208
Psp1406I	AACGTT	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	274
Sau3AI	GATC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	4 cut(s)	42, 208, 238, 246
SfaNI	GCATC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	88, 220
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	238
TasI	AATT	2 cut(s)	88, 220
TfiI	GAWTC	2 cut(s)	148, 267
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	3 cut(s)	39, 174, 259
XapI	RAATTY	2 cut(s)	88, 220
XmnI	GAANNNNTTC	2 cut(s)	223, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.