Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0028647

Physical Location & Seq

Genomic Coordinates Forward (+)

17866077 .. 17867095

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAAATTTTTTTGTTATGGGTGACAGGTGAGCTGGGTGACAAAATGGCTGACCTAGAGTTGAAGAGAAGGAAACTAATTAATCTGAAAATGCAAAAGGATGTTGGACCTGGGGTGCAGAACCATACTTCTAGTGCACTTAATGGAACCCTGTCCTCCGTTGTACCGTCTTACTTTTTCTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCATTTGTTGCCGATACTAGAAGCCGACCGCCTTTCTGAGTATCAAGACACACATGAAGAAAATTTACCGCTGTCAAAACAATTGCAAGAATTTCAGGTTTCTAATCTTAAATTCAAGATGACAAATACGTACTTTCTAAATGATCAACTCCAACATTGGAATGCTTGGTTTATGCGCAGATGTTTGGAATGCTTGGCTCTTGTTGTGAGAAGGGAGATGGACCTAAATATCAAATTAGAGTCAGCAGATGCAGTTAGGAATGCCATTGACAATTCTGATTCTAGGATTGAAGAACTAGAACTTCAGCTGCAGAAGTGTGTAATTGCAAAAAATGACTTTGAGATAAAAATGGAAGAAGCTGTCCAGGATTCAGGAAAAAGTCTTGTGGCACTGAAAATGCTCTTTGCTGCAGGAAGAAAGGACATTATAGCAGAGTTTCGTGTGATGGCCTCATCTTTGTGTAAAGAAATGGGAATGGTGGAAACTCAGTTGAAGCGGTGGAAGGAAACAGCTCATGAAACACTTTGTTTACGTGACAAAGCCCAATCATTGAAAGCTTCATTAAGTACAAAGGTCTACTTCCATTCCCAGTTAACTCTCTCATACTCATATCAGTTGCTTCAACTTATTAGTTGTAACTTGTATGGCAAGACAAGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

294

Amino Acids

33.61

Weight (kDa)

7.0

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028647)

Species	Orthologous Gene IDs
malus_domestica	MD08G1204500.v1.1
pyrus_communis	pycom08g17690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	3 cut(s)	247, 287, 715
AcsI	RAATTY	4 cut(s)	6, 280, 308, 329
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	3 cut(s)	165, 350, 787
AgsI	TTSAA	6 cut(s)	64, 334, 509, 712, 772, 842
AjnI	CCWGG	2 cut(s)	109, 582
AluBI	AGCT	5 cut(s)	34, 526, 578, 731, 776
AluI	AGCT	5 cut(s)	34, 526, 578, 731, 776
Alw21I	GWGCWC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	666
ApaLI	GTGCAC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	526, 626
ApoI	RAATTY	4 cut(s)	6, 280, 308, 329
AseI	ATTAAT	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	107, 439
AsuHPI	GGTGA	3 cut(s)	34, 41, 50
AvaII	GGWCC	2 cut(s)	107, 439
BaeGI	GKGCMC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	513, 613
BccI	CCATC	2 cut(s)	430, 658
BciT130I	CCWGG	2 cut(s)	111, 584
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	5 cut(s)	56, 132, 236, 501, 515
BfmI	CTRYAG	2 cut(s)	527, 627
BisI	GCNGC	2 cut(s)	527, 627
BlsI	GCNGC	2 cut(s)	528, 628
Bme1390I	CCNGG	2 cut(s)	111, 584
Bme18I	GGWCC	2 cut(s)	107, 439
BmgT120I	GGNCC	2 cut(s)	107, 439
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	111, 584
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	802
BsaAI	YACGTR	2 cut(s)	348, 752
BsaJI	CCNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	111, 584
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	230, 246, 719
BseNI	ACTGG	1 cut(s)	808
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	513, 613
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	668
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	139
BsmI	GAATGC	3 cut(s)	385, 413, 484
BsnI	GGCC	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	3 cut(s)	247, 287, 715
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	229, 247, 718
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	2 cut(s)	531, 631
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	111, 584
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	2 cut(s)	348, 752
BstDEI	CTNAG	3 cut(s)	216, 255, 705
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 873
BstNI	CCWGG	2 cut(s)	111, 584
BstSCI	CCNGG	2 cut(s)	109, 582
BstSFI	CTRYAG	2 cut(s)	527, 627
BstSLI	GKGCMC	1 cut(s)	139
BstSNI	TACGTA	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	513, 613
BsuRI	GGCC	1 cut(s)	668
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	107, 439
Csp6I	GTAC	3 cut(s)	164, 349, 786
CviAII	CATG	2 cut(s)	272, 734
CviQI	GTAC	3 cut(s)	164, 349, 786
DdeI	CTNAG	3 cut(s)	216, 255, 705
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco105I	TACGTA	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	107, 439
Eco57I	CTGAAG	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	109, 582
FaeI	CATG	2 cut(s)	275, 737
FaiI	YATR	9 cut(s)	19, 126, 273, 392, 647, 735, 823, 829, 864
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	2 cut(s)	271, 733
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	2 cut(s)	527, 627
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	527, 627
FspBI	CTAG	5 cut(s)	56, 132, 236, 501, 515
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	2 cut(s)	527, 627
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	668
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	275, 737
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	3 cut(s)	458, 497, 587
HpaI	GTTAAC	1 cut(s)	813
HphI	GGTGA	3 cut(s)	34, 41, 50
Hpy166II	GTNNAC	4 cut(s)	137, 749, 796, 813
Hpy188I	TCNGA	3 cut(s)	87, 256, 496
Hpy188III	TCNNGA	4 cut(s)	263, 334, 591, 734
Hpy8I	GTNNAC	4 cut(s)	137, 749, 796, 813
HpyAV	CCTTC	3 cut(s)	63, 423, 715
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	2 cut(s)	347, 751
HpyCH4V	TGCA	9 cut(s)	4, 94, 118, 137, 304, 470, 529, 545, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 873
HpyF3I	CTNAG	3 cut(s)	216, 255, 705
HpySE526I	ACGT	2 cut(s)	347, 751
Hsp92II	CATG	2 cut(s)	275, 737
HspAI	GCGC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	813
Kzo9I	GATC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	513, 613
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	5 cut(s)	56, 132, 236, 501, 515
MaeII	ACGT	2 cut(s)	347, 751
MaeIII	GTNAC	4 cut(s)	22, 38, 752, 854
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	6 cut(s)	76, 172, 287, 521, 584, 645
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	9 cut(s)	6, 78, 280, 299, 308, 329, 452, 490, 540
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	85, 394
MnlI	CCTC	3 cut(s)	166, 195, 679
MseI	TTAA	5 cut(s)	81, 141, 327, 782, 812
MslI	CAYNNNNRTG	2 cut(s)	378, 676
MspA1I	CMGCKG	2 cut(s)	289, 526
MspR9I	CCNGG	2 cut(s)	111, 584
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	3 cut(s)	385, 413, 484
MvaI	CCWGG	2 cut(s)	111, 584
MwoI	GCNNNNNNNGC	2 cut(s)	226, 873
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	275, 737
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	3 cut(s)	22, 38, 752
NsbI	TGCGCA	1 cut(s)	395
PagI	TCATGA	1 cut(s)	733
PctI	GAATGC	3 cut(s)	385, 413, 484
PfeI	GAWTC	2 cut(s)	497, 587
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	2 cut(s)	528, 628
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	2 cut(s)	348, 752
PshBI	ATTAAT	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	109, 582
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	109, 582
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	107, 439
PstI	CTGCAG	2 cut(s)	531, 631
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	3 cut(s)	165, 350, 787
RsaNI	GTAC	3 cut(s)	164, 349, 786
RseI	CAYNNNNRTG	2 cut(s)	378, 676
SaqAI	TTAA	5 cut(s)	81, 141, 327, 782, 812
SatI	GCNGC	2 cut(s)	527, 627
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	107, 439
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	111, 584
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	2 cut(s)	527, 627
SinI	GGWCC	2 cut(s)	107, 439
SmiMI	CAYNNNNRTG	2 cut(s)	378, 676
SnaBI	TACGTA	1 cut(s)	348
Sse9I	AATT	9 cut(s)	6, 78, 280, 299, 308, 329, 452, 490, 540
SsiI	CCGC	3 cut(s)	247, 287, 715
SspMI	CTAG	5 cut(s)	56, 132, 236, 501, 515
StyD4I	CCNGG	2 cut(s)	109, 582
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	2 cut(s)	350, 754
TasI	AATT	9 cut(s)	6, 78, 280, 299, 308, 329, 452, 490, 540
TatI	WGTACW	1 cut(s)	785
TfiI	GAWTC	2 cut(s)	497, 587
Tru1I	TTAA	5 cut(s)	81, 141, 327, 782, 812
Tru9I	TTAA	5 cut(s)	81, 141, 327, 782, 812
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	3 cut(s)	22, 38, 752
TseI	GCWGC	2 cut(s)	526, 626
Tsp45I	GTSAC	3 cut(s)	22, 38, 752
TspDTI	ATGAA	3 cut(s)	288, 750, 768
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	615
VneI	GTGCAC	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	107, 439
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	4 cut(s)	6, 280, 308, 329
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	5 cut(s)	56, 132, 236, 501, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.