Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18614469 .. 18614708

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCAGTGGATGCTCAGCTGATTGCCAACAAGTCCCCGCCGCCGCAGCCAGCTGGAACTGGAAGCAATGCGGTTGAGACGGCTGAGTTTTGGGAAAATGGTTATGTTGGAGAGACTTCGACTTCGACTCCTACTCCTACTTCTACTTCTATGAGCAGCTGGGGAGGAGGACATGGGTTTGGCAATGGCGGTGATCATCATGGGTGCTTTAGCATTTCCGTTGAAGATTATGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

80

Amino Acids

8.1

Weight (kDa)

4.2

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	38, 41, 44, 71, 189
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	19, 53, 159
AluI	AGCT	3 cut(s)	19, 53, 159
Alw26I	GTCTC	2 cut(s)	71, 107
ApeKI	GCWGC	2 cut(s)	46, 156
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AsuHPI	GGTGA	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	58, 168
BceAI	ACGGC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	71, 107
BisI	GCNGC	4 cut(s)	41, 44, 47, 157
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	4 cut(s)	42, 45, 48, 158
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 118, 142, 148
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	73, 190
Bse8I	GATNNNNATC	1 cut(s)	231
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	73, 190
BseMII	CTCAG	2 cut(s)	29, 75
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	58, 168
BseYI	CCCAGC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	71, 107
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	193, 232
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	38, 41, 44, 71, 189
BspCNI	CTCAG	2 cut(s)	28, 76
BsrDI	GCAATG	2 cut(s)	73, 190
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	193, 232
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	15, 84
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	196, 235
BstMAI	GTCTC	2 cut(s)	71, 107
BstMBI	GATC	2 cut(s)	193, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 46
BstV1I	GCAGC	2 cut(s)	58, 168
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	51
CviAII	CATG	2 cut(s)	173, 200
CviJI	RGCY	5 cut(s)	19, 49, 53, 83, 159
CviKI_1	RGCY	5 cut(s)	19, 49, 53, 83, 159
DdeI	CTNAG	2 cut(s)	15, 84
DpnI	GATC	2 cut(s)	195, 234
DpnII	GATC	2 cut(s)	193, 232
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	176, 203
FaiI	YATR	5 cut(s)	105, 152, 174, 201, 231
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	172, 199
FauI	CCCGC	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	41, 44, 47, 157
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	41, 44, 47, 157
GluI	GCNGC	4 cut(s)	41, 44, 47, 157
GsaI	CCCAGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	176, 203
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 46
HpyF3I	CTNAG	2 cut(s)	15, 84
Hsp92II	CATG	2 cut(s)	176, 203
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	193, 232
LpnPI	CCDG	4 cut(s)	39, 45, 63, 145
Lsp1109I	GCAGC	2 cut(s)	58, 168
MalI	GATC	2 cut(s)	195, 234
MboI	GATC	2 cut(s)	193, 232
MboII	GAAGA	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	158, 161
MspA1I	CMGCKG	3 cut(s)	19, 53, 159
MwoI	GCNNNNNNNGC	2 cut(s)	11, 46
NdeII	GATC	2 cut(s)	193, 232
NlaIII	CATG	2 cut(s)	176, 203
PkrI	GCNGC	4 cut(s)	42, 45, 48, 158
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	159
PvuII	CAGCTG	3 cut(s)	19, 53, 159
SatI	GCNGC	4 cut(s)	41, 44, 47, 157
Sau3AI	GATC	2 cut(s)	193, 232
SchI	GAGTC	1 cut(s)	121
SetI	ASST	3 cut(s)	21, 55, 161
SgeI	CNNG	8 cut(s)	43, 49, 62, 66, 72, 172, 185, 212
SsiI	CCGC	5 cut(s)	38, 41, 44, 71, 189
TaqI	TCGA	2 cut(s)	119, 125
TauI	GCSGC	2 cut(s)	43, 46
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	2 cut(s)	46, 156
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.