pycom08g18650

Glucuronoxylan 4-O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
18759589 .. 18760268
680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGCACCAAAACCCCACCATCCCTCGCCCACGCCATCATCCACTACGCGACCACAAACGTCACCCCACAACAAACCATCAAAGAAGTCTCCGTCTCCGCCGCGGTCCTTTCCCAAAAATCACCCTGCAACTTTCTAGTCTTCGGCCTCGGCTTCGACAGCCTCATGTGGACGGCTCTCAACCACGGCGGAAGAACCGTCTTCCTCGAAGAAGCCAGTTCATGGATCGACCAGATCAAACAGAAGCTGCCGGGGTTGGAGGCCTACCACGTGGCGTACGACACCAAGGTTCACGAAGCGGACAAGCTCATGGAGATGGGAAGGAAGGAAGAGTGCAGGGCTGTCGGGGATCCAAGGCTCTCAAAGTGCGAGTTGGCGCTCAAGAACTTGCCGAGCGATGTGTACGATATAGAGTGGGATTTGATCGATGGAGCGCCATATACACGGCGGGGCTGATGGGGAGGAACAGGGAGGAGGGGGAAACTCATGTGTTTGTGCATGATGTGGATAGAGTGGTTGAGGACAGCTTCTCCAAGGCATTCCTCTGTGAGGGGTACTTGACGGAGCAGGAGGGCAGGATCAGGCACTTCACTATTCCCAGTCACAGGGCTCGATTAGGTAGACCGTTCTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

212

Amino Acids

24.24

Weight (kDa)

11.43

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 142 - 196 4.4e-18 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AccI GTMKAC 1 cut(s) 619
AccII CGCG 2 cut(s) 48, 102
AciI CCGC 6 cut(s) 97, 100, 102, 187, 297, 446
AclWI GGATC 4 cut(s) 231, 342, 355, 584
AcvI CACGTG 1 cut(s) 269
AfaI GTAC 3 cut(s) 276, 402, 554
AfiI CCNNNNNNNGG 3 cut(s) 220, 547, 603
AluBI AGCT 3 cut(s) 245, 305, 525
AluI AGCT 3 cut(s) 245, 305, 525
Alw26I GTCTC 2 cut(s) 92, 98
AlwI GGATC 4 cut(s) 231, 342, 355, 584
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 143, 259
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 2 cut(s) 377, 434
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 53, 112
AvaII GGWCC 1 cut(s) 104
BamHI GGATCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 610
BbrPI CACGTG 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 131, 191
BbvI GCAGC 1 cut(s) 232
BccI CCATC 6 cut(s) 26, 42, 84, 308, 420, 448
BceAI ACGGC 3 cut(s) 187, 200, 459
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 92, 98
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 2 cut(s) 378, 435
BisI GCNGC 2 cut(s) 100, 246
BlsI GCNGC 2 cut(s) 101, 247
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 591
BpiI GAAGAC 2 cut(s) 131, 191
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 269
BsaJI CCNNGG 7 cut(s) 100, 146, 182, 249, 283, 351, 531
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 547, 603
Bse1I ACTGG 2 cut(s) 214, 597
BseCI ATCGAT 1 cut(s) 424
BseDI CCNNGG 7 cut(s) 100, 146, 182, 249, 283, 351, 531
BseGI GGATG 2 cut(s) 18, 37
BseLI CCNNNNNNNGG 3 cut(s) 220, 547, 603
BseNI ACTGG 2 cut(s) 214, 597
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 48, 102
BshFI GGCC 2 cut(s) 145, 261
BshVI ATCGAT 1 cut(s) 424
BsiSI CCGG 1 cut(s) 249
BsiWI CGTACG 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 220, 547, 603
BsmAI GTCTC 2 cut(s) 92, 98
BsmBI CGTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 2 cut(s) 145, 261
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 5 cut(s) 223, 232, 347, 421, 576
BspACI CCGC 6 cut(s) 97, 100, 102, 187, 297, 446
BspANI GGCC 2 cut(s) 145, 261
BspDI ATCGAT 1 cut(s) 424
BspFNI CGCG 2 cut(s) 48, 102
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 4 cut(s) 231, 342, 355, 584
BsrI ACTGG 2 cut(s) 214, 597
BssECI CCNNGG 7 cut(s) 100, 146, 182, 249, 283, 351, 531
BssMI GATC 5 cut(s) 223, 232, 347, 421, 576
BssT1I CCWWGG 3 cut(s) 283, 351, 531
Bst4CI ACNGT 2 cut(s) 197, 624
Bst6I CTCTTC 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 2 cut(s) 100, 182
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 2 cut(s) 18, 37
BstFNI CGCG 2 cut(s) 48, 102
BstH2I RGCGCY 2 cut(s) 378, 435
BstHHI GCGC 2 cut(s) 377, 434
BstKTI GATC 5 cut(s) 226, 235, 350, 424, 579
BstMAI GTCTC 2 cut(s) 92, 98
BstMBI GATC 5 cut(s) 223, 232, 347, 421, 576
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 248
BstUI CGCG 2 cut(s) 48, 102
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 2 cut(s) 131, 191
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 424
BsuRI GGCC 2 cut(s) 145, 261
BsuTUI ATCGAT 1 cut(s) 424
BtgI CCRYGG 2 cut(s) 100, 182
BtgZI GCGATG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 18, 37
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 2 cut(s) 377, 434
Cfr13I GGNCC 1 cut(s) 104
Cfr42I CCGCGG 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 424
Csp6I GTAC 3 cut(s) 275, 401, 553
CviAII CATG 5 cut(s) 164, 220, 308, 485, 497
CviQI GTAC 3 cut(s) 275, 401, 553
DdeI CTNAG 1 cut(s) 633
DpnI GATC 5 cut(s) 225, 234, 349, 423, 578
DpnII GATC 5 cut(s) 223, 232, 347, 421, 576
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
EciI GGCGGA 2 cut(s) 86, 202
Eco130I CCWWGG 3 cut(s) 283, 351, 531
Eco147I AGGCCT 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoT14I CCWWGG 3 cut(s) 283, 351, 531
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 3 cut(s) 283, 351, 531
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 5 cut(s) 167, 223, 311, 488, 500
FaiI YATR 8 cut(s) 165, 221, 309, 408, 437, 439, 486, 498
FatI CATG 5 cut(s) 163, 219, 307, 484, 496
FauI CCCGC 1 cut(s) 439
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 100, 246
FokI GGATG 2 cut(s) 5, 24
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 100, 246
FspBI CTAG 1 cut(s) 135
GlaI GCGC 2 cut(s) 376, 433
GluI GCNGC 2 cut(s) 100, 246
HaeII RGCGCY 2 cut(s) 378, 435
HaeIII GGCC 2 cut(s) 145, 261
HapII CCGG 1 cut(s) 249
HhaI GCGC 2 cut(s) 377, 434
Hin1II CATG 5 cut(s) 167, 223, 311, 488, 500
Hin6I GCGC 2 cut(s) 375, 432
HinP1I GCGC 2 cut(s) 375, 432
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 53, 112
Hpy166II GTNNAC 4 cut(s) 169, 290, 401, 620
Hpy188III TCNNGA 2 cut(s) 291, 380
Hpy8I GTNNAC 4 cut(s) 169, 290, 401, 620
HpyAV CCTTC 2 cut(s) 313, 317
HpyCH4III ACNGT 2 cut(s) 197, 624
HpyCH4IV ACGT 2 cut(s) 58, 268
HpyCH4V TGCA 4 cut(s) 4, 127, 334, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 2 cut(s) 58, 268
Hsp92II CATG 5 cut(s) 167, 223, 311, 488, 500
HspAI GCGC 2 cut(s) 375, 432
KspI CCGCGG 1 cut(s) 103
Kzo9I GATC 5 cut(s) 223, 232, 347, 421, 576
LmnI GCTCC 2 cut(s) 429, 562
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 1 cut(s) 135
MaeII ACGT 2 cut(s) 58, 268
MaeIII GTNAC 2 cut(s) 59, 599
MalI GATC 5 cut(s) 225, 234, 349, 423, 578
MboI GATC 5 cut(s) 223, 232, 347, 421, 576
MboII GAAGA 5 cut(s) 131, 191, 202, 219, 339
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 536
MvnI CGCG 2 cut(s) 48, 102
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 250
NdeII GATC 5 cut(s) 223, 232, 347, 421, 576
NlaIII CATG 5 cut(s) 167, 223, 311, 488, 500
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 2 cut(s) 127, 415
NmuCI GTSAC 2 cut(s) 59, 599
PceI AGGCCT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PctI GAATGC 1 cut(s) 536
Pfl23II CGTACG 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 101, 247
PmaCI CACGTG 1 cut(s) 269
PmlI CACGTG 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 269
PspCI CACGTG 1 cut(s) 269
PspLI CGTACG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 3 cut(s) 276, 402, 554
RsaNI GTAC 3 cut(s) 275, 401, 553
RseI CAYNNNNRTG 1 cut(s) 312
SacII CCGCGG 1 cut(s) 103
SatI GCNGC 2 cut(s) 100, 246
Sau3AI GATC 5 cut(s) 223, 232, 347, 421, 576
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 610
SetI ASST 7 cut(s) 61, 247, 271, 289, 307, 527, 619
Sfr303I CCGCGG 1 cut(s) 103
SgrBI CCGCGG 1 cut(s) 103
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 6 cut(s) 97, 100, 102, 187, 297, 446
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 3 cut(s) 283, 351, 531
TaaI ACNGT 2 cut(s) 197, 624
TaiI ACGT 2 cut(s) 61, 271
TaqI TCGA 5 cut(s) 154, 205, 226, 424, 610
TauI GCSGC 1 cut(s) 102
TseFI GTSAC 2 cut(s) 59, 599
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 59, 599
TspDTI ATGAA 1 cut(s) 208
TspGWI ACGGA 2 cut(s) 80, 575
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.