Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18907765 .. 18908435

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGCGCAGTTACAAGCCGAGCAAGGCGCAGCAGCAACAGCAGGGCCACCGGTGTTAGAGAACTAAGCCATTTGGTGAGCATGGGCGCCAATGGGGCTTCTTTGGAGGAATTTCCACTGCAACTACTACTCGAAGCCACCTTCAATTTCTCTGAAGAACACAAAATCGGAACACGCAGCTACGGCTCTGTCTACTATGCCACATTAGATGACGGTCGCCAAGTTGCCATCAAGCGTGCTGAGACATCAGTCTCTTCCTCATACGTTGGTGGCTGCACAAAGCGCCAGCAAGACCATGCTTTTGTAAACGAGCTTGAGTCCCTTTCACGTCTCAACCACGAGAACTTGGTTCGATTACTTGGATTCTTCGAAGACGCAAAAGAGCGAATACTCGTGTATGAACACATGAACAATGGCTCCTTCCATGACCATCTCCACAAGCTCCCACATTCGCCTTTGCTCTCATGGGCCAAGCGCATCAAAGTGGCTCTTGACGCAGCCCGAGGGATTGAGTACCTGCACGAGCAAGCAGTCCCGCCAATCATACACCGCTACATTAAGTCATCCAACATACTACTGCATGACACATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046983 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

198

Amino Acids

22.2

Weight (kDa)

7.97

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 194	2.6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	53 - 195	5.1e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	536, 550
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	515
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	180, 313, 442
AluI	AGCT	3 cut(s)	180, 313, 442
Alw26I	GTCTC	3 cut(s)	236, 256, 335
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	2 cut(s)	45, 468
ApeKI	GCWGC	5 cut(s)	30, 33, 177, 273, 497
ApoI	RAATTY	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsiGI	ACCGGT	1 cut(s)	50
AspLEI	GCGC	5 cut(s)	8, 30, 89, 285, 477
AspS9I	GGNCC	2 cut(s)	45, 468
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	86
BauI	CACGAG	3 cut(s)	338, 392, 521
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	42, 45, 189, 260, 509
BccI	CCATC	2 cut(s)	236, 438
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	236, 256, 335
BfaI	CTAG	1 cut(s)	592
BfoI	RGCGCY	2 cut(s)	90, 286
BfuAI	ACCTGC	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	5 cut(s)	31, 34, 178, 274, 498
BlsI	GCNGC	5 cut(s)	32, 35, 179, 275, 499
BmeT110I	CYCGRG	1 cut(s)	501
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	45, 468
BmiI	GGNNCC	2 cut(s)	88, 418
BmsI	GCATC	1 cut(s)	486
BoxI	GACNNNNGTC	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bse118I	RCCGGY	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	5 cut(s)	42, 45, 189, 260, 509
BsgI	GTGCAG	2 cut(s)	259, 503
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	47, 470
BshNI	GGYRCC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	304, 518
BsmAI	GTCTC	3 cut(s)	236, 256, 335
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	304, 518
BsnI	GGCC	2 cut(s)	47, 470
BsoBI	CYCGRG	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	369
BspACI	CCGC	2 cut(s)	536, 550
BspANI	GGCC	2 cut(s)	47, 470
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	88, 418
BspMI	ACCTGC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	502
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	3 cut(s)	338, 392, 521
Bst2BI	CACGAG	3 cut(s)	338, 392, 521
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	237, 287, 528
BstDEI	CTNAG	2 cut(s)	65, 240
BstF5I	GGATG	1 cut(s)	563
BstH2I	RGCGCY	2 cut(s)	90, 286
BstHHI	GCGC	5 cut(s)	8, 30, 89, 285, 477
BstMAI	GTCTC	3 cut(s)	236, 256, 335
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 95, 183, 282, 494
BstPAI	GACNNNNGTC	1 cut(s)	248
BstV1I	GCAGC	5 cut(s)	42, 45, 189, 260, 509
BstV2I	GAAGAC	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	47, 470
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	563
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	237, 287, 528
CfoI	GCGC	5 cut(s)	8, 30, 89, 285, 477
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	45, 468
CseI	GACGC	2 cut(s)	383, 503
Csp6I	GTAC	1 cut(s)	514
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	6 cut(s)	82, 296, 406, 425, 465, 581
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	65, 240
DinI	GGCGCC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	501
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	6 cut(s)	85, 299, 409, 428, 468, 584
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	2 cut(s)	304, 518
FatI	CATG	6 cut(s)	81, 295, 405, 424, 464, 580
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	31, 34, 178, 274, 498
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	5 cut(s)	31, 34, 178, 274, 498
FspBI	CTAG	1 cut(s)	592
GlaI	GCGC	5 cut(s)	7, 29, 88, 284, 476
GluI	GCNGC	5 cut(s)	31, 34, 178, 274, 498
HaeII	RGCGCY	2 cut(s)	90, 286
HaeIII	GGCC	2 cut(s)	47, 470
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	383, 503
HhaI	GCGC	5 cut(s)	8, 30, 89, 285, 477
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	85, 299, 409, 428, 468, 584
Hin6I	GCGC	5 cut(s)	6, 28, 87, 283, 475
HinP1I	GCGC	5 cut(s)	6, 28, 87, 283, 475
HinfI	GANTC	2 cut(s)	317, 363
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	193, 307
Hpy188I	TCNGA	2 cut(s)	154, 170
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	2 cut(s)	193, 307
HpyAV	CCTTC	2 cut(s)	151, 430
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	264, 328
HpyCH4V	TGCA	4 cut(s)	121, 276, 520, 580
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 95, 183, 282, 494
HpyF3I	CTNAG	2 cut(s)	65, 240
HpySE526I	ACGT	2 cut(s)	264, 328
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	85, 299, 409, 428, 468, 584
HspAI	GCGC	5 cut(s)	6, 28, 87, 283, 475
KasI	GGCGCC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	422, 447
LpnPI	CCDG	4 cut(s)	28, 64, 299, 530
Lsp1109I	GCAGC	5 cut(s)	42, 45, 189, 260, 509
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	1 cut(s)	592
MaeII	ACGT	2 cut(s)	264, 328
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	4 cut(s)	167, 246, 358, 383
MluCI	AATT	2 cut(s)	110, 145
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	3 cut(s)	100, 268, 497
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	482
MspI	CCGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	5 cut(s)	39, 95, 183, 282, 494
NarI	GGCGCC	1 cut(s)	87
NlaIII	CATG	6 cut(s)	85, 299, 409, 428, 468, 584
NlaIV	GGNNCC	2 cut(s)	88, 418
NmeAIII	GCCGAG	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	363
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	32, 35, 179, 275, 499
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	88, 418
PspPI	GGNCC	2 cut(s)	45, 468
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	5 cut(s)	31, 34, 178, 274, 498
Sau96I	GGNCC	2 cut(s)	45, 468
SchI	GAGTC	1 cut(s)	326
SetI	ASST	7 cut(s)	143, 182, 267, 315, 331, 444, 519
SfaNI	GCATC	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	369
SgrAI	CRCCGGYG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	110, 145
SsiI	CCGC	2 cut(s)	536, 550
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	267, 331
TaqI	TCGA	3 cut(s)	132, 352, 369
TasI	AATT	2 cut(s)	110, 145
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	5 cut(s)	30, 33, 177, 273, 497
TspDTI	ATGAA	2 cut(s)	414, 422
TspRI	CASTG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.