Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18942677 .. 18944524

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGCTTGAAACCAAAACGGACGACGGACACAGCCCCAACCAAATCACACAAAATCTCATAACCAAGGCGGAAAGCAAGAGGAGGAGAAGGGAGAGAGAAAAGAAAAGAATCAAAGCAGAAAATTCAGGTGGCTACAATGGCGGACAACAAAGAAATCATCCCACCGCCGTACGACGTGAACGCCAAATGGGACGCCTGTCTCGATCTGACCGTCCGGCGCTTCGTCTACTCCTCCTTGGGTGGTGCCTTTGGCGGTTTCCTTTTGTTCAGAAGTCCGGCGTCTCGTTGGGCTTCTGTAGCTTTTGGTGCTGGATTGGGCATTGGATCTGCATACACAGAGTGCTCTCATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0042407 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044284 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0061024 GO:0061617 GO:0071840 GO:0098542 GO:0098573 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko04350 map04350

Pfam Domains

Protein Families

DUF543

Protein Analysis

120

Amino Acids

14.01

Weight (kDa)

11.07

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	229
AciI	CCGC	4 cut(s)	71, 144, 168, 256
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	124
AcyI	GRCGYC	2 cut(s)	196, 282
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	179
AluBI	AGCT	2 cut(s)	7, 303
AluI	AGCT	2 cut(s)	7, 303
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	207, 289
AlwI	GGATC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	207, 289
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	199
BsaHI	GRCGYC	2 cut(s)	196, 282
BsaJI	CCNNGG	2 cut(s)	66, 238
BseDI	CCNNGG	2 cut(s)	66, 238
BseGI	GGATG	1 cut(s)	160
BseRI	GAGGAG	3 cut(s)	97, 100, 224
BseXI	GCAGC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	218, 279
BsiWI	CGTACG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	207, 289
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	206, 327
BspACI	CCGC	4 cut(s)	71, 144, 168, 256
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	66, 238
BssMI	GATC	2 cut(s)	206, 327
BssNI	GRCGYC	2 cut(s)	196, 282
BssT1I	CCWWGG	2 cut(s)	66, 238
Bst4CI	ACNGT	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	196, 282
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	209, 330
BstMAI	GTCTC	2 cut(s)	207, 289
BstMBI	GATC	2 cut(s)	206, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 300, 309
BstPAI	GACNNNNGTC	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	223
CseI	GACGC	2 cut(s)	204, 271
Csp6I	GTAC	1 cut(s)	173
CviJI	RGCY	5 cut(s)	7, 36, 135, 294, 303
CviKI_1	RGCY	5 cut(s)	7, 36, 135, 294, 303
CviQI	GTAC	1 cut(s)	173
DpnI	GATC	2 cut(s)	208, 329
DpnII	GATC	2 cut(s)	206, 327
DraIII	CACNNNGTG	1 cut(s)	343
EciI	GGCGGA	2 cut(s)	86, 159
Eco130I	CCWWGG	2 cut(s)	66, 238
EcoT14I	CCWWGG	2 cut(s)	66, 238
ErhI	CCWWGG	2 cut(s)	66, 238
Esp3I	CGTCTC	1 cut(s)	289
FaiI	YATR	2 cut(s)	62, 335
FaqI	GGGAC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	224
HapII	CCGG	2 cut(s)	218, 279
HgaI	GACGC	2 cut(s)	204, 271
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	2 cut(s)	196, 282
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	218, 279
Hpy166II	GTNNAC	2 cut(s)	182, 230
Hpy188I	TCNGA	2 cut(s)	211, 273
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	2 cut(s)	182, 230
Hpy99I	CGWCG	2 cut(s)	29, 180
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	4, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 300, 309
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	2 cut(s)	196, 282
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	206, 327
LpnPI	CCDG	5 cut(s)	114, 212, 231, 292, 298
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	178
MalI	GATC	2 cut(s)	208, 329
MboI	GATC	2 cut(s)	206, 327
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	124
MnlI	CCTC	3 cut(s)	75, 78, 245
MspI	CCGG	2 cut(s)	218, 279
MwoI	GCNNNNNNNGC	3 cut(s)	141, 300, 309
NdeII	GATC	2 cut(s)	206, 327
NlaIV	GGNNCC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	202, 211
PfeI	GAWTC	1 cut(s)	111
Pfl23II	CGTACG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	6
PshAI	GACNNNNGTC	1 cut(s)	199
PspLI	CGTACG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	206, 327
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	4 cut(s)	9, 133, 181, 305
SfcI	CTRYAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	4 cut(s)	71, 144, 168, 256
StyI	CCWWGG	2 cut(s)	66, 238
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	111
TseI	GCWGC	1 cut(s)	4
TspGWI	ACGGA	2 cut(s)	35, 42
XapI	RAATTY	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.