Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19847875 .. 19849104

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGGAAGGAGTGGTGCCTGGTGGTGGTGCCACATATGTACATCTCTCAGAATTTATTCCTACCATAAAGAATTCTATGGAAGATTTAGATGAGCAAATTGGTGCTGACCTTGTAGCAAAGGCTCTACTTGCTCCTGCAAAAGCAATTGCAATTAATGCAGGGGATGATGGAGAAGTTGTTGTGGAGAAGATTAAACGTTCTGATTGGAGAGTTGGGTACAATGCAATGACAGGAAACTATGAAGATCTCCCAGATGCGGGAGTTATAGATCCTTCTAGGGTTTCAAGATGTGCCCTTCAAATTGCAGCCTCCATTGCCGGAGTGGTTCTTACAACTCAAGCTGTATTGGTGGAGAAAACAAAGAAGAAAAAGCCAGCTGTTCCTTTTGTTCCGGGAATAACTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044424 GO:0044444 GO:0044464 GO:0051082 GO:0061077 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

138

Amino Acids

14.43

Weight (kDa)

4.97

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	2 - 120	3.8e-25	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	16, 29
AciI	CCGC	1 cut(s)	260
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	53, 73
AfaI	GTAC	2 cut(s)	42, 221
AfiI	CCNNNNNNNGG	3 cut(s)	26, 259, 260
AgsI	TTSAA	2 cut(s)	288, 302
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	2 cut(s)	344, 380
AluI	AGCT	2 cut(s)	344, 380
AlwI	GGATC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	53, 73
AseI	ATTAAT	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	16, 29
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	396
BfaI	CTAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	21, 396
BmiI	GGNNCC	2 cut(s)	18, 31
BmrFI	CCNGG	2 cut(s)	21, 396
BmsI	GCATC	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 259, 260
Bse3DI	GCAATG	2 cut(s)	234, 315
BseBI	CCWGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	26, 259, 260
BseMI	GCAATG	2 cut(s)	234, 315
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	16, 29
BsiSI	CCGG	2 cut(s)	321, 395
BslI	CCNNNNNNNGG	3 cut(s)	26, 259, 260
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	247, 271
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	18, 31
BspPI	GGATC	1 cut(s)	266
BspT107I	GGYRCC	2 cut(s)	16, 29
BsrDI	GCAATG	2 cut(s)	234, 315
BsrGI	TGTACA	1 cut(s)	40
BssMI	GATC	2 cut(s)	247, 271
Bst2UI	CCWGG	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	49, 408
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	250, 274
BstMBI	GATC	2 cut(s)	247, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 158, 317
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	19, 394
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	2 cut(s)	247, 271
BstYI	RGATCY	2 cut(s)	247, 271
BtsCI	GGATG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	41, 220
CviJI	RGCY	5 cut(s)	125, 311, 344, 376, 380
CviKI_1	RGCY	5 cut(s)	125, 311, 344, 376, 380
CviQI	GTAC	2 cut(s)	41, 220
DdeI	CTNAG	2 cut(s)	49, 408
DpnI	GATC	2 cut(s)	249, 273
DpnII	GATC	2 cut(s)	247, 271
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	19
FaiI	YATR	6 cut(s)	37, 39, 68, 80, 243, 269
FauI	CCCGC	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	309
HapII	CCGG	2 cut(s)	321, 395
HpaII	CCGG	2 cut(s)	321, 395
Hpy188I	TCNGA	2 cut(s)	52, 205
Hpy188III	TCNNGA	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	285, 308
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	140, 152, 161, 227, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 158, 317
HpyF3I	CTNAG	2 cut(s)	49, 408
HpySE526I	ACGT	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	247, 271
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	6, 33, 147, 150, 219, 267, 334, 390, 408
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	199
MalI	GATC	2 cut(s)	249, 273
MboI	GATC	2 cut(s)	247, 271
MboII	GAAGA	4 cut(s)	95, 202, 257, 379
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	2 cut(s)	247, 271
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	6 cut(s)	53, 73, 99, 147, 153, 303
MnlI	CCTC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	156, 195
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	321, 395
MspR9I	CCNGG	2 cut(s)	21, 396
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	131, 158, 317
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	2 cut(s)	247, 271
NlaIV	GGNNCC	2 cut(s)	18, 31
PdmI	GAANNNNTTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	18, 31
PsuI	RGATCY	2 cut(s)	247, 271
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	42, 221
RsaNI	GTAC	2 cut(s)	41, 220
SaqAI	TTAA	2 cut(s)	156, 195
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	247, 271
ScrFI	CCNGG	2 cut(s)	21, 396
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	4 cut(s)	114, 202, 346, 382
SfaNI	GCATC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	6 cut(s)	53, 73, 99, 147, 153, 303
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	19, 394
TaiI	ACGT	1 cut(s)	202
TasI	AATT	6 cut(s)	53, 73, 99, 147, 153, 303
TatI	WGTACW	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	156, 195
Tru9I	TTAA	2 cut(s)	156, 195
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	258
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	2 cut(s)	53, 73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.