pycom08g19930

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
19882568 .. 19883531
964 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
ATGGAGCAATTTAAGCCACAAAACAAGCCACAAAACAAGGAAACATTTGGCCATTATCCAACATTGGAGCAGTGTAAGCTAGACTTTTATGGCTCGGGCAACTGCTCACTTTCCATGGTGTGCCCCCAAATTAAAGTCCTTGAGGTGCAAGGCTGTAGCTGGATTCGGGTTCGTGATGCAAAGCATTTGAGCAAACTTTCAATTGCCAATAATGCAGGGAGAGTCTACATGGTTGATTTTGAGAAACTTGTTGCTCTAGAGTTCTTATCCATTAGGGGAGTCCAGTGGTGTTGGGACGCAATAAGAAAAATGCTTCAATGGGCAAGTGAAGTGAAGCACCTTTATATGAAGGTGGAATTCACAGGGGATTTCGAGACCCTTCAACCCTTTCCAGAGGTTGACTTCGTTGATTTCTTCAATAACCATCCCAAGCTGCAAAAGTTTGATATCCATGGAGCCATGTTTGCTGCCCTTTGTCAAAAGAACAGCCTGAAAAATGTTGATTCGGGATTTGCAATTCCTTGCCTGGAAGAAGTGATGATCGACGTGAGATCACCGCTGAATGCTGAACAGAAAATGAGCACTCTTGAGTCCTTGTTGAAGTACGGGAAAAATCTGAAGACAATGGTGATAAAGATTCTTCAGATGAAGAGCAGTCACAGCAGCGCAGATGATTTCTTTGACGAGATTTGCAGGTTTAGATACATGAACCGAAAGATCGTTAGAATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

245

Amino Acids

28.34

Weight (kDa)

8.35

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 684
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 2 cut(s) 626, 638
AfaI GTAC 1 cut(s) 605
AgsI TTSAA 5 cut(s) 201, 317, 383, 418, 601
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 3 cut(s) 79, 159, 433
AluI AGCT 3 cut(s) 79, 159, 433
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 433, 467, 663
ApoI RAATTY 1 cut(s) 356
AspLEI GCGC 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 546, 640
AvaI CYCGRG 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 420, 454, 675
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 80, 257
BfmI CTRYAG 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 684
BisI GCNGC 3 cut(s) 434, 468, 664
BlsI GCNGC 3 cut(s) 435, 469, 665
Bme1390I CCNGG 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 161, 608
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 114, 451
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 114, 451
BseGI GGATG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 3 cut(s) 420, 454, 675
BshFI GGCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 125, 584
Bsp143I GATC 3 cut(s) 540, 551, 717
Bsp19I CCATGG 2 cut(s) 114, 451
BspACI CCGC 1 cut(s) 557
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 684
BspQI GCTCTTC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 114, 451
BssMI GATC 3 cut(s) 540, 551, 717
BssT1I CCWWGG 2 cut(s) 114, 451
Bst2UI CCWGG 1 cut(s) 527
Bst6I CTCTTC 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 114, 451
BstF5I GGATG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 3 cut(s) 543, 554, 720
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 3 cut(s) 540, 551, 717
BstMWI GCNNNNNNNGC 5 cut(s) 13, 76, 212, 464, 660
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 420, 454, 675
BstV2I GAAGAC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 2 cut(s) 114, 451
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 77, 290
BveI ACCTGC 1 cut(s) 684
CfoI GCGC 1 cut(s) 668
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 604
CviAII CATG 5 cut(s) 115, 229, 452, 460, 706
CviQI GTAC 1 cut(s) 604
DpnI GATC 3 cut(s) 542, 553, 719
DpnII GATC 3 cut(s) 540, 551, 717
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 114, 451
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 448
Eco57I CTGAAG 2 cut(s) 626, 638
Eco88I CYCGRG 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 525
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 114, 451
ErhI CCWWGG 2 cut(s) 114, 451
FaeI CATG 5 cut(s) 118, 232, 455, 463, 709
FaiI YATR 8 cut(s) 90, 116, 230, 345, 347, 453, 461, 707
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 308
FatI CATG 5 cut(s) 114, 228, 451, 459, 705
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 434, 468, 664
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 434, 468, 664
FspBI CTAG 2 cut(s) 80, 257
GlaI GCGC 1 cut(s) 667
GluI GCNGC 3 cut(s) 434, 468, 664
HaeIII GGCC 1 cut(s) 51
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 668
Hin1II CATG 5 cut(s) 118, 232, 455, 463, 709
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 6 cut(s) 163, 222, 279, 503, 590, 637
HphI GGTGA 2 cut(s) 546, 640
Hpy166II GTNNAC 2 cut(s) 226, 400
Hpy188I TCNGA 2 cut(s) 618, 645
Hpy188III TCNNGA 6 cut(s) 173, 257, 373, 392, 507, 587
Hpy8I GTNNAC 2 cut(s) 226, 400
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 2 cut(s) 343, 389
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 6 cut(s) 148, 179, 215, 436, 515, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 76, 212, 464, 660
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 5 cut(s) 118, 232, 455, 463, 709
HspAI GCGC 1 cut(s) 666
Kzo9I GATC 3 cut(s) 540, 551, 717
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 3 cut(s) 4, 67, 455
LpnPI CCDG 9 cut(s) 145, 201, 296, 348, 405, 503, 512, 539, 679
Lsp1109I GCAGC 3 cut(s) 420, 454, 675
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 80, 257
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 656
MalI GATC 3 cut(s) 542, 553, 719
MboI GATC 3 cut(s) 540, 551, 717
MboII GAAGA 5 cut(s) 406, 542, 631, 632, 661
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 2 cut(s) 125, 584
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 5 cut(s) 8, 129, 201, 356, 516
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 3 cut(s) 231, 288, 599
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 2 cut(s) 136, 388
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 12, 132
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 5 cut(s) 13, 76, 212, 464, 660
NcoI CCATGG 2 cut(s) 114, 451
NdeII GATC 3 cut(s) 540, 551, 717
NlaIII CATG 5 cut(s) 118, 232, 455, 463, 709
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 644
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 3 cut(s) 163, 503, 637
PkrI GCNGC 3 cut(s) 435, 469, 665
PleI GAGTC 3 cut(s) 230, 287, 598
PpsI GAGTC 3 cut(s) 230, 287, 598
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 457
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 12, 132
SatI GCNGC 3 cut(s) 434, 468, 664
Sau3AI GATC 3 cut(s) 540, 551, 717
SchI GAGTC 3 cut(s) 231, 288, 599
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 2 cut(s) 125, 584
SetI ASST 9 cut(s) 81, 147, 161, 342, 354, 399, 435, 549, 698
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 140, 587
SmoI CTYRAG 2 cut(s) 140, 587
Sse9I AATT 5 cut(s) 8, 129, 201, 356, 516
SsiI CCGC 1 cut(s) 557
SspMI CTAG 2 cut(s) 80, 257
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 2 cut(s) 114, 451
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 372, 543
TasI AATT 5 cut(s) 8, 129, 201, 356, 516
TfiI GAWTC 3 cut(s) 163, 503, 637
Tru1I TTAA 2 cut(s) 12, 132
Tru9I TTAA 2 cut(s) 12, 132
TscAI CASTG 2 cut(s) 77, 290
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 3 cut(s) 433, 467, 663
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 3 cut(s) 362, 662, 722
TspRI CASTG 2 cut(s) 77, 290
XapI RAATTY 1 cut(s) 356
XbaI TCTAGA 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 80, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.