pycom08g19950

Transmembrane emp24 domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
19889974 .. 19891455
1482 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGGCGACGAGGAGGAGTTGGAGTGGGAGTGCGGTTGCTGCTGCCATCTTGTTGATCCTGTGCGTGGTACGGACTGGCCAAGCCATCTGGGTGACGTTACCTGCCTCCGGCACGAAATGCGTCTCGGATGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTCATTCCCGATGATCGATCCTTAACTCCCAGACCCCCACCATCGCCGCCAAGGTGA

Protein Analysis

75

Amino Acids

7.9

Weight (kDa)

8.88

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 2 cut(s) 32, 215
AclWI GGATC 2 cut(s) 49, 180
AcoI YGGCCR 2 cut(s) 76, 156
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 64, 107
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 49, 180
AoxI GGCC 2 cut(s) 76, 156
ApeKI GCWGC 2 cut(s) 38, 41
AsuHPI GGTGA 1 cut(s) 103
BalI TGGCCA 1 cut(s) 78
BbvI GCAGC 2 cut(s) 25, 28
BccI CCATC 3 cut(s) 53, 92, 217
BcoDI GTCTC 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 3 cut(s) 39, 42, 215
BlsI GCNGC 3 cut(s) 40, 43, 216
Bsa29I ATCGAT 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 4 cut(s) 7, 13, 37, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 107
Bse1I ACTGG 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 64, 107
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 25, 28
BseXI GCAGC 2 cut(s) 25, 28
BshFI GGCC 2 cut(s) 78, 158
BshVI ATCGAT 1 cut(s) 184
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 64, 107
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 2 cut(s) 78, 158
Bsp143I GATC 3 cut(s) 54, 181, 185
BspACI CCGC 2 cut(s) 32, 215
BspANI GGCC 2 cut(s) 78, 158
BspDI ATCGAT 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 2 cut(s) 49, 180
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 3 cut(s) 54, 181, 185
BssT1I CCWWGG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 117
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 3 cut(s) 57, 184, 188
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 54, 181, 185
BstMWI GCNNNNNNNGC 2 cut(s) 38, 117
BstV1I GCAGC 2 cut(s) 25, 28
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 2 cut(s) 78, 158
BsuTUI ATCGAT 1 cut(s) 184
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 68
CviJI RGCY 3 cut(s) 78, 83, 158
CviKI_1 RGCY 3 cut(s) 78, 83, 158
CviQI GTAC 1 cut(s) 68
DpnI GATC 3 cut(s) 56, 183, 187
DpnII GATC 3 cut(s) 54, 181, 185
EaeI YGGCCR 2 cut(s) 76, 156
Eco130I CCWWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
Esp3I CGTCTC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 39, 42, 215
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 39, 42, 215
GluI GCNGC 3 cut(s) 39, 42, 215
HaeIII GGCC 2 cut(s) 78, 158
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 109
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 136, 176
Hpy99I CGWCG 4 cut(s) 10, 149, 152, 170
HpyCH4IV ACGT 3 cut(s) 95, 144, 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 117
HpySE526I ACGT 3 cut(s) 95, 144, 165
Kzo9I GATC 3 cut(s) 54, 181, 185
LpnPI CCDG 7 cut(s) 60, 71, 73, 114, 121, 149, 211
Lsp1109I GCAGC 2 cut(s) 25, 28
MaeII ACGT 3 cut(s) 95, 144, 165
MaeIII GTNAC 2 cut(s) 91, 96
MalI GATC 3 cut(s) 56, 183, 187
MboI GATC 3 cut(s) 54, 181, 185
MlsI TGGCCA 1 cut(s) 78
MluNI TGGCCA 1 cut(s) 78
MnlI CCTC 3 cut(s) 3, 6, 115
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 38, 117
NdeII GATC 3 cut(s) 54, 181, 185
NmuCI GTSAC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 174
PkrI GCNGC 3 cut(s) 40, 43, 216
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 3 cut(s) 39, 42, 215
Sau3AI GATC 3 cut(s) 54, 181, 185
SetI ASST 5 cut(s) 98, 103, 147, 168, 224
SmiMI CAYNNNNRTG 1 cut(s) 89
SsiI CCGC 2 cut(s) 32, 215
StyI CCWWGG 1 cut(s) 218
TaiI ACGT 3 cut(s) 98, 147, 168
TaqI TCGA 1 cut(s) 184
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 38, 41
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.