Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20259743 .. 20260164

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAGATGCAGGGAAATGGATTTCCAATGACAAGTGACCACTCTGCAGTTAAGGTTCCACATGTACTGACTGTTGCTGGTTCTGATTTGGGTGCCGGTGCTGGAATCCAAGCTGATCTTAAGACTTGTGCTGCTCTCGGAGTGTACTGCTCTACTGTCATAACTGCTGTTACTACACAAAACACTGTTGGGGTTCAGGGTGTAAAGATTGTGCCCGAGGAGTTTGTTGTTTGGAACTGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004789 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008902 GO:0008972 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016765 GO:0016772 GO:0016773 GO:0016776 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

Phos_pyr_kin TMP-TENI

Protein Analysis

82

Amino Acids

8.37

Weight (kDa)

4.92

Isoelectric Point (pI)

5.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	29 - 76	9.2e-17	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	66, 146
AflII	CTTAAG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	61
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	57, 94
BsaJI	CCNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	57, 94
BspMAI	CTGCAG	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	3 cut(s)	73, 157, 187
BstAFI	CTTAAG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	65, 145
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	1 cut(s)	113
CviKI_1	RGCY	1 cut(s)	113
CviQI	GTAC	2 cut(s)	65, 145
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	215
FaeI	CATG	1 cut(s)	65
FaiI	YATR	2 cut(s)	63, 161
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	65
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	85, 140
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	73, 157, 187
HpyCH4V	TGCA	2 cut(s)	10, 47
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	63, 87, 109, 182
Lsp1109I	GCAGC	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	35, 169
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	2 cut(s)	51, 120
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	57, 94
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	65
PciI	ACATGT	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	57, 94
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	66, 146
RsaNI	GTAC	2 cut(s)	65, 145
SaqAI	TTAA	2 cut(s)	51, 120
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	2 cut(s)	57, 115
SfcI	CTRYAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
TaaI	ACNGT	3 cut(s)	73, 157, 187
TatI	WGTACW	2 cut(s)	64, 144
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	51, 120
Tru9I	TTAA	2 cut(s)	51, 120
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	119
XceI	RCATGY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.