Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20262340 .. 20265287

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTGACATAGTAACTCCAAATTTGAAAGAGGCATCCGCTTTACTGGATGGCGTGAAAATAAAAACCGTTTCTGACATGCGTTCTGCTGCGAAATTGTTACATGATATGGGTCCACGGTTAGTTATTGGAACATGCTTGAGATCTCAGTTCTCTCTTAATCGGACGACTTACAGAACTCTTGTTTTTTGCATTGTTGCAGTTTATAATAGTCCTTCCAATGTCACTCAACTGTTGGACATGTTTTTAATAAAGCAGAATGTTGCATTAGTACTAAATTCGAATGGTTTGGCCAGGTTTTATGAACCAGTATCATTGCTTTTCAGAAATGTTCTTGTCAAAGGCGGAGACCTTCCTGATTCATTGGATGCCGTCGATGTCTTCTTTGATGGTAACGAGCACTTATATGAGTTGCGTTCATCACGCATAAAAACTCGTAATACTCATGGAACTGGTTGCACTTTGGCATCATGTATTGCAGCTGAGCTGGCAAAATGTTCTTCAATGCTTGAGGCTGTTAAGGCAGCTAAGTTCTTTGTTGAGACCGCCTTGGATTATAGCAAAGACATTTTCATTGGAAATGGTCCCCAAGGCCCCTTCGATCACCTAACGAGGCTCAAGAGTAACATTCACAATTCTGGTAGACAAGTCAGATTCAATCCAAGCGATCTATTCTTGTATGTTGTTACAGATTCGCGTATGAACAGAAAGTGGGGCCATTCTATTTCAGATGATGTTAAAGATGCCGTACAAGGAGGTGCTGCTATTGTCCAATTGAGGGAAAAGGATATTGAAACCGGGGATTTCCTGGAAGCAGCCAAGTCATGTCTCTTAATTTGCCGTGCCCATGGAGTTCCATTACTAATAAACGATCGCATTGATGTTGCACTTGCCTCTGACGCTGATGGTGTGCATATTGGCCAGTCCGACATGCCCGCCCATGTTGCACGTTCTCTCCTTGGCCCCAGAAAGATAATTGGTGTGTCTTGCAAGACCCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004789 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008902 GO:0008972 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016765 GO:0016772 GO:0016773 GO:0016776 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

Phos_pyr_kin TMP-TENI

Protein Analysis

335

Amino Acids

36.52

Weight (kDa)

8.08

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	2 - 48	2.3e-07	Phosphomethylpyrimidine kinase
Phos_pyr_kin	PF08543	107 - 196	7.6e-23	Phosphomethylpyrimidine kinase
TMP-TENI	PF02581	226 - 333	1.3e-34	Thiamine monophosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	643
AccII	CGCG	1 cut(s)	697
AciI	CCGC	4 cut(s)	39, 345, 546, 936
AcoI	YGGCCR	2 cut(s)	291, 919
AcsI	RAATTY	2 cut(s)	22, 277
AfaI	GTAC	2 cut(s)	273, 750
AfiI	CCNNNNNNNGG	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	4 cut(s)	28, 504, 658, 794
AjnI	CCWGG	2 cut(s)	293, 807
AluBI	AGCT	3 cut(s)	482, 487, 527
AluI	AGCT	3 cut(s)	482, 487, 527
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	3 cut(s)	342, 536, 833
AoxI	GGCC	5 cut(s)	291, 592, 715, 919, 961
ApeKI	GCWGC	5 cut(s)	89, 479, 524, 761, 815
ApoI	RAATTY	2 cut(s)	22, 277
AspS9I	GGNCC	5 cut(s)	113, 584, 593, 715, 962
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	113, 584
BaeGI	GKGCMC	1 cut(s)	847
BalI	TGGCCA	2 cut(s)	293, 921
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	5 cut(s)	76, 491, 536, 748, 827
BccI	CCATC	3 cut(s)	44, 383, 899
BceAI	ACGGC	3 cut(s)	356, 731, 825
BciT130I	CCWGG	2 cut(s)	295, 809
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	342, 536, 833
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	5 cut(s)	90, 480, 525, 762, 816
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	5 cut(s)	91, 481, 526, 763, 817
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	3 cut(s)	295, 799, 809
Bme18I	GGWCC	2 cut(s)	113, 584
BmgT120I	GGNCC	5 cut(s)	113, 584, 593, 715, 962
BmiI	GGNNCC	5 cut(s)	114, 586, 595, 716, 964
BmrFI	CCNGG	3 cut(s)	295, 799, 809
BmsI	GCATC	4 cut(s)	44, 358, 476, 733
BpiI	GAAGAC	1 cut(s)	373
Bpu1102I	GCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	3 cut(s)	160, 530, 602
BpuMI	CCSGG	1 cut(s)	799
BsaI	GGTCTC	2 cut(s)	342, 536
BsaJI	CCNNGG	6 cut(s)	116, 549, 589, 798, 847, 958
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse1I	ACTGG	4 cut(s)	51, 308, 457, 922
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	295, 809
BseDI	CCNNGG	6 cut(s)	116, 549, 589, 798, 847, 958
BseGI	GGATG	3 cut(s)	35, 55, 373
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	161, 474
BseNI	ACTGG	4 cut(s)	51, 308, 457, 922
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	5 cut(s)	76, 491, 536, 748, 827
Bsh1236I	CGCG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	874
BshFI	GGCC	5 cut(s)	293, 594, 717, 921, 963
BsiEI	CGRYCG	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmAI	GTCTC	3 cut(s)	342, 536, 833
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	5 cut(s)	293, 594, 717, 921, 963
Bso31I	GGTCTC	2 cut(s)	342, 536
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	402, 847
Bsp143I	GATC	4 cut(s)	143, 601, 667, 871
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	847
BspACI	CCGC	4 cut(s)	39, 345, 546, 936
BspANI	GGCC	5 cut(s)	293, 594, 717, 921, 963
BspCNI	CTCAG	2 cut(s)	160, 475
BspFNI	CGCG	1 cut(s)	697
BspLI	GGNNCC	5 cut(s)	114, 586, 595, 716, 964
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	2 cut(s)	342, 536
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	4 cut(s)	51, 308, 457, 922
BssECI	CCNNGG	6 cut(s)	116, 549, 589, 798, 847, 958
BssMI	GATC	4 cut(s)	143, 601, 667, 871
BssT1I	CCWWGG	4 cut(s)	549, 589, 847, 958
Bst2UI	CCWGG	2 cut(s)	295, 809
Bst4CI	ACNGT	3 cut(s)	70, 120, 234
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	489, 936
BstDEI	CTNAG	3 cut(s)	147, 483, 528
BstDSI	CCRYGG	2 cut(s)	116, 847
BstF5I	GGATG	3 cut(s)	35, 55, 373
BstFNI	CGCG	1 cut(s)	697
BstKTI	GATC	4 cut(s)	146, 604, 670, 874
BstMAI	GTCTC	3 cut(s)	342, 536, 833
BstMBI	GATC	4 cut(s)	143, 601, 667, 871
BstMCI	CGRYCG	1 cut(s)	874
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 521, 899, 944
BstNI	CCWGG	2 cut(s)	295, 809
BstNSI	RCATGY	4 cut(s)	82, 138, 244, 934
BstSCI	CCNGG	3 cut(s)	293, 797, 807
BstSLI	GKGCMC	1 cut(s)	847
BstUI	CGCG	1 cut(s)	697
BstV1I	GCAGC	5 cut(s)	76, 491, 536, 748, 827
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	5 cut(s)	293, 594, 717, 921, 963
BtgI	CCRYGG	2 cut(s)	116, 847
BtsCI	GGATG	3 cut(s)	35, 55, 373
Cac8I	GCNNGC	2 cut(s)	489, 936
Cfr13I	GGNCC	5 cut(s)	113, 584, 593, 715, 962
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	2 cut(s)	272, 749
CviQI	GTAC	2 cut(s)	272, 749
DdeI	CTNAG	3 cut(s)	147, 483, 528
DpnI	GATC	4 cut(s)	145, 603, 669, 873
DpnII	GATC	4 cut(s)	143, 601, 667, 871
EaeI	YGGCCR	2 cut(s)	291, 919
EciI	GGCGGA	1 cut(s)	360
Eco130I	CCWWGG	4 cut(s)	549, 589, 847, 958
Eco31I	GGTCTC	2 cut(s)	342, 536
Eco47I	GGWCC	2 cut(s)	113, 584
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	293, 807
EcoT14I	CCWWGG	4 cut(s)	549, 589, 847, 958
ErhI	CCWWGG	4 cut(s)	549, 589, 847, 958
FaqI	GGGAC	1 cut(s)	570
FauI	CCCGC	1 cut(s)	943
FblI	GTMKAC	1 cut(s)	643
Fnu4HI	GCNGC	5 cut(s)	90, 480, 525, 762, 816
FokI	GGATG	3 cut(s)	22, 62, 380
Fsp4HI	GCNGC	5 cut(s)	90, 480, 525, 762, 816
GluI	GCNGC	5 cut(s)	90, 480, 525, 762, 816
HaeIII	GGCC	5 cut(s)	293, 594, 717, 921, 963
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	908
HinfI	GANTC	3 cut(s)	359, 654, 692
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	116, 644
Hpy188I	TCNGA	7 cut(s)	76, 165, 326, 653, 730, 898, 928
Hpy188III	TCNNGA	2 cut(s)	356, 619
Hpy8I	GTNNAC	2 cut(s)	116, 644
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	225, 362, 607
HpyCH4III	ACNGT	3 cut(s)	70, 120, 234
HpyCH4IV	ACGT	1 cut(s)	949
HpyCH4V	TGCA	9 cut(s)	192, 200, 266, 459, 479, 887, 913, 947, 990
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 521, 899, 944
HpyF3I	CTNAG	3 cut(s)	147, 483, 528
HpySE526I	ACGT	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	143, 601, 667, 871
Lsp1109I	GCAGC	5 cut(s)	76, 491, 536, 748, 827
LweI	GCATC	4 cut(s)	44, 358, 476, 733
MaeII	ACGT	1 cut(s)	949
MaeIII	GTNAC	6 cut(s)	13, 99, 223, 392, 623, 685
MalI	GATC	4 cut(s)	145, 603, 669, 873
MboI	GATC	4 cut(s)	143, 601, 667, 871
MboII	GAAGA	2 cut(s)	373, 492
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	402, 847
MlsI	TGGCCA	2 cut(s)	293, 921
MluCI	AATT	7 cut(s)	22, 95, 277, 634, 773, 834, 975
MluNI	TGGCCA	2 cut(s)	293, 921
MmeI	TCCRAC	2 cut(s)	216, 951
MnlI	CCTC	6 cut(s)	25, 505, 606, 749, 771, 904
Mox20I	TGGCCA	2 cut(s)	293, 921
MscI	TGGCCA	2 cut(s)	293, 921
MseI	TTAA	5 cut(s)	159, 248, 519, 738, 833
MslI	CAYNNNNRTG	1 cut(s)	405
Msp20I	TGGCCA	2 cut(s)	293, 921
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	3 cut(s)	295, 799, 809
MunI	CAATTG	1 cut(s)	773
MvaI	CCWGG	2 cut(s)	295, 809
MvnI	CGCG	1 cut(s)	697
MwoI	GCNNNNNNNGC	4 cut(s)	488, 521, 899, 944
NciI	CCSGG	1 cut(s)	799
NcoI	CCATGG	1 cut(s)	847
NdeII	GATC	4 cut(s)	143, 601, 667, 871
NlaIV	GGNNCC	5 cut(s)	114, 586, 595, 716, 964
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	4 cut(s)	82, 138, 244, 934
NspV	TTCGAA	1 cut(s)	281
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	359, 654, 692
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	5 cut(s)	91, 481, 526, 763, 817
Ple19I	CGATCG	1 cut(s)	874
PscI	ACATGT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	293, 807
PspGI	CCWGG	2 cut(s)	293, 807
PspN4I	GGNNCC	5 cut(s)	114, 586, 595, 716, 964
PspPI	GGNCC	5 cut(s)	113, 584, 593, 715, 962
PsuI	RGATCY	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	874
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	273, 750
RsaNI	GTAC	2 cut(s)	272, 749
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	159, 248, 519, 738, 833
SatI	GCNGC	5 cut(s)	90, 480, 525, 762, 816
Sau3AI	GATC	4 cut(s)	143, 601, 667, 871
Sau96I	GGNCC	5 cut(s)	113, 584, 593, 715, 962
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	3 cut(s)	295, 799, 809
SduI	GDGCHC	2 cut(s)	402, 847
SetI	ASST	8 cut(s)	299, 354, 484, 489, 529, 609, 760, 952
SfaNI	GCATC	4 cut(s)	44, 358, 476, 733
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	2 cut(s)	113, 584
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	139, 509, 617
SmoI	CTYRAG	3 cut(s)	139, 509, 617
Sse9I	AATT	7 cut(s)	22, 95, 277, 634, 773, 834, 975
SsiI	CCGC	4 cut(s)	39, 345, 546, 936
StyD4I	CCNGG	3 cut(s)	293, 797, 807
StyI	CCWWGG	4 cut(s)	549, 589, 847, 958
TaaI	ACNGT	3 cut(s)	70, 120, 234
TaiI	ACGT	1 cut(s)	952
TaqI	TCGA	3 cut(s)	281, 375, 600
TasI	AATT	7 cut(s)	22, 95, 277, 634, 773, 834, 975
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	359, 654, 692
Tru1I	TTAA	5 cut(s)	159, 248, 519, 738, 833
Tru9I	TTAA	5 cut(s)	159, 248, 519, 738, 833
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	5 cut(s)	89, 479, 524, 761, 815
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	5 cut(s)	318, 351, 408, 562, 716
VpaK11BI	GGWCC	2 cut(s)	113, 584
XapI	RAATTY	2 cut(s)	22, 277
XceI	RCATGY	4 cut(s)	82, 138, 244, 934
XmiI	GTMKAC	1 cut(s)	643
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.