Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20303992 .. 20304870

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTTCCAACAACTGGGAAAAAAGAGTTGAAAGAGCTTATGGCTGTCGTACAATGCAAGTATACTGGCAAATTGAATAAAGGGATTACATCCTTCTTTGATGCTCAAGGAAATATTAGAGACTTCTCAAAGATCCGAGAGTCTATTCTCAGTGTTCTGAGTGCAGTTGGAATGAAGACTTCAAAGCCAAATCTGGTTCAAGCTGGTCCTCCTGCAGCTTTTTCTGTTTTGTTAGACGGCTGTGTTGTTGGTTCTATATCTTCCAGTAAAGTTGAGAAAGTAGTGGCTCATTTAAGGAGGCTGAAAGTGGCAGCTGCTCCAGTGCTTTTCTGTCTAATATCAATCCTTGACATTGTTGCTGAAACGATGTCTCAGATTCCTGACGATCTGGAAGTGGGATATGTTCCATTAAGCATGGGTGGGGCATATCCTGGTCTGTACCTTTTCACTATCCCTTCTAGATTTGTTCGGCCAGTAAAGAATATTTCAATTCCTTCTGTTGAAGGGTTTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

173

Amino Acids

18.54

Weight (kDa)

9.32

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpa2_4	PF06883	83 - 157	3.7e-19	RNA polymerase I, Rpa2 specific domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	470
AfaI	GTAC	2 cut(s)	51, 440
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	6 cut(s)	31, 76, 183, 200, 489, 503
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	4 cut(s)	37, 203, 218, 314
AluI	AGCT	4 cut(s)	37, 203, 218, 314
Alw26I	GTCTC	2 cut(s)	114, 375
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	215, 311, 314
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	227, 301, 323
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	114, 375
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	3 cut(s)	216, 312, 315
BlsI	GCNGC	3 cut(s)	217, 313, 316
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	5 cut(s)	19, 70, 264, 320, 473
BseBI	CCWGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	149, 163, 386
BseNI	ACTGG	5 cut(s)	19, 70, 264, 320, 473
BseXI	GCAGC	3 cut(s)	227, 301, 323
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	114, 375
BsnI	GGCC	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	132, 385
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	150, 162, 385
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	1 cut(s)	127
BsrI	ACTGG	5 cut(s)	19, 70, 264, 320, 473
BssMI	GATC	2 cut(s)	132, 385
BssNAI	GTATAC	1 cut(s)	63
Bst1107I	GTATAC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	149, 158, 372
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	135, 388
BstMAI	GTCTC	2 cut(s)	114, 375
BstMBI	GATC	2 cut(s)	132, 385
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	227, 301, 323
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BstZ17I	GTATAC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	157, 327
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	50, 439
CviAII	CATG	1 cut(s)	415
CviQI	GTAC	2 cut(s)	50, 439
DdeI	CTNAG	3 cut(s)	149, 158, 372
DpnI	GATC	2 cut(s)	134, 387
DpnII	GATC	2 cut(s)	132, 385
EaeI	YGGCCR	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	418
FaiI	YATR	6 cut(s)	41, 63, 257, 402, 416, 427
FatI	CATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	216, 312, 315
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	216, 312, 315
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	3 cut(s)	216, 312, 315
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	418
HinfI	GANTC	2 cut(s)	140, 376
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	137, 159, 375
Hpy188III	TCNNGA	3 cut(s)	380, 389, 459
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	4 cut(s)	103, 465, 497, 504
HpyCH4V	TGCA	3 cut(s)	57, 164, 215
HpyF3I	CTNAG	3 cut(s)	149, 158, 372
Hsp92II	CATG	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	132, 385
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	3 cut(s)	227, 301, 323
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	459
MalI	GATC	2 cut(s)	134, 387
MboI	GATC	2 cut(s)	132, 385
MboII	GAAGA	2 cut(s)	187, 252
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	2 cut(s)	71, 489
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	32, 148
MnlI	CCTC	2 cut(s)	219, 291
MseI	TTAA	3 cut(s)	293, 410, 517
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	132, 385
NlaIII	CATG	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	217, 313, 316
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	51, 440
RsaNI	GTAC	2 cut(s)	50, 439
SaqAI	TTAA	3 cut(s)	293, 410, 517
SatI	GCNGC	3 cut(s)	216, 312, 315
Sau3AI	GATC	2 cut(s)	132, 385
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	5 cut(s)	39, 205, 220, 316, 444
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	71, 489
SspI	AATATT	2 cut(s)	115, 484
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	430
TasI	AATT	2 cut(s)	71, 489
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	293, 410, 517
Tru9I	TTAA	3 cut(s)	293, 410, 517
TscAI	CASTG	2 cut(s)	157, 327
TseI	GCWGC	3 cut(s)	215, 311, 314
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	157, 327
Van91I	CCANNNNNTGG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.