pycom08g21260

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
20792439 .. 20792639
201 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGTATCAGCCAAGCGTGGATCAATTTCTTTTCGTACTATGGAAAAGGAGGAGGGTTCTTCTAGGGTACCAACTGAGCCTCTTCTCTCCTAGTCGAGATGCATCACCCCCAGATTCGCCTCCGCTCCTTGGCTGGCCTATGCGTCCTCATCCATCGTCTCAGTCACCAGTCGTTCAAGTTCATCAAACCACAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.59

Weight (kDa)

10.83

Isoelectric Point (pI)

99.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 124
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 27
AfaI GTAC 2 cut(s) 36, 68
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 134
Asp718I GGTACC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 96, 156
BanI GGYRCC 1 cut(s) 66
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 3 cut(s) 62, 90, 195
BmiI GGNNCC 1 cut(s) 68
BmsI GCATC 2 cut(s) 88, 110
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 65, 173
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 66, 172
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 74, 159
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 134
CseI GACGC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 35, 67
CviJI RGCY 5 cut(s) 10, 78, 132, 136, 194
CviKI_1 RGCY 5 cut(s) 10, 78, 132, 136, 194
CviQI GTAC 2 cut(s) 35, 67
DdeI CTNAG 2 cut(s) 74, 159
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 162
FaiI YATR 2 cut(s) 40, 140
FokI GGATG 1 cut(s) 135
FspBI CTAG 3 cut(s) 62, 90, 195
HaeIII GGCC 1 cut(s) 136
HgaI GACGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 113
HphI GGTGA 2 cut(s) 96, 156
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 74, 159
KpnI GGTACC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 3 cut(s) 118, 123, 180
LweI GCATC 2 cut(s) 88, 110
MaeI CTAG 3 cut(s) 62, 90, 195
MaeIII GTNAC 1 cut(s) 162
MalI GATC 1 cut(s) 21
MbiI CCGCTC 1 cut(s) 124
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 50, 73
MluCI AATT 1 cut(s) 23
MnlI CCTC 5 cut(s) 42, 45, 89, 129, 156
Mph1103I ATGCAT 1 cut(s) 103
NdeII GATC 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 162
NsiI ATGCAT 1 cut(s) 103
PfeI GAWTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 68
RsaI GTAC 2 cut(s) 36, 68
RsaNI GTAC 2 cut(s) 35, 67
Sau3AI GATC 1 cut(s) 19
SetI ASST 1 cut(s) 196
SfaNI GCATC 2 cut(s) 88, 110
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 122
SspMI CTAG 3 cut(s) 62, 90, 195
StyI CCWWGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 94
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 113
TseFI GTSAC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 170
XspI CTAG 3 cut(s) 62, 90, 195
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.