Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

46659 .. 47433

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTGTCTTCATGGTAGTGGTTCTCTGTTTCCTCTGTTTGCTCTGCATCTGCTCTGCTCTTCTCAGATGGAACGAAGTTAGATACAGAAAGAAAGGCCTCCCTCCAGGCACAATGGGCTGGCCAGTCTTTGGTGAAACCACTGAATTTCTCAAGCAAGGTCCAAACTTCATGAAAAACCAAAGAGCAAGGTATGGGAGTTTTTTCAAATCCCACATATTGGGGTGCCCTACAGTGGTGTCCATGGATCCAGAGGTGAACAGATACATCCTAATGAATGAAGCCAAAGGGCTGGTTCCTGGCTACCCACAATCCATGTTGGATATTTTGGGAAAATGCAACATTGCAGCAGTCCATGGCTCCACTCACAAGTACATGAGAGGGGCATTGCTTGCCCTCATCAACCCTACCATGATCAATCATGAGCCAGATTTTGCCCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0003674 GO:0003824 GO:0004497 GO:0006091 GO:0006629 GO:0006694 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009987 GO:0010268 GO:0010817 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022900 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

149

Amino Acids

16.63

Weight (kDa)

9.13

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	2 cut(s)	131, 220
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	131, 220, 235
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	106, 298
AlwI	GGATC	2 cut(s)	242, 255
AoxI	GGCC	2 cut(s)	97, 122
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	146, 268
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	108, 300
BclI	TGATCA	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	108, 300
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	4 cut(s)	227, 249, 297, 361
BmrFI	CCNGG	2 cut(s)	108, 300
BmsI	GCATC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	243, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 220, 235
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	2 cut(s)	342, 386
BseBI	CCWGG	2 cut(s)	108, 300
BseDI	CCNNGG	2 cut(s)	243, 355
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	131, 220, 235
BseMI	GCAATG	2 cut(s)	342, 386
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	359
BshFI	GGCC	2 cut(s)	99, 124
BshNI	GGYRCC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	131, 220, 235
BsnI	GGCC	2 cut(s)	99, 124
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	247, 414
Bsp19I	CCATGG	2 cut(s)	243, 355
BspANI	GGCC	2 cut(s)	99, 124
BspCNI	CTCAG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	171, 421
BspLI	GGNNCC	4 cut(s)	227, 249, 297, 361
BspPI	GGATC	2 cut(s)	242, 255
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	225
BsrDI	GCAATG	2 cut(s)	342, 386
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	243, 355
BssMI	GATC	2 cut(s)	247, 414
BssT1I	CCWWGG	2 cut(s)	243, 355
Bst2UI	CCWGG	2 cut(s)	108, 300
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	122, 393
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	2 cut(s)	243, 355
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	250, 417
BstMBI	GATC	2 cut(s)	247, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 392
BstNI	CCWGG	2 cut(s)	108, 300
BstSCI	CCNGG	2 cut(s)	106, 298
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	99, 124
BtgI	CCRYGG	2 cut(s)	243, 355
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	141, 240
Cac8I	GCNNGC	2 cut(s)	122, 393
CciI	TCATGA	2 cut(s)	171, 421
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	8 cut(s)	13, 172, 244, 316, 356, 376, 412, 422
CviJI	RGCY	9 cut(s)	5, 99, 120, 124, 284, 292, 303, 360, 427
CviKI_1	RGCY	9 cut(s)	5, 99, 120, 124, 284, 292, 303, 360, 427
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	249, 416
DpnII	GATC	2 cut(s)	247, 414
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	243, 355
Eco147I	AGGCCT	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	106, 298
EcoT14I	CCWWGG	2 cut(s)	243, 355
ErhI	CCWWGG	2 cut(s)	243, 355
FaeI	CATG	8 cut(s)	16, 175, 247, 319, 359, 379, 415, 425
FatI	CATG	8 cut(s)	12, 171, 243, 315, 355, 375, 411, 421
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	99, 124
Hin1II	CATG	8 cut(s)	16, 175, 247, 319, 359, 379, 415, 425
HphI	GGTGA	2 cut(s)	146, 268
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	3 cut(s)	172, 251, 422
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	48, 339, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 392
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	8 cut(s)	16, 175, 247, 319, 359, 379, 415, 425
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	247, 414
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	9 cut(s)	93, 106, 120, 138, 264, 278, 285, 312, 441
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	57
MalI	GATC	2 cut(s)	249, 416
MboI	GATC	2 cut(s)	247, 414
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	2 cut(s)	146, 442
MluNI	TGGCCA	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	44, 110, 114, 247, 374, 407
Mox20I	TGGCCA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	124
MslI	CAYNNNNRTG	2 cut(s)	17, 272
Msp20I	TGGCCA	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	108, 300
MvaI	CCWGG	2 cut(s)	108, 300
MwoI	GCNNNNNNNGC	2 cut(s)	117, 392
NcoI	CCATGG	2 cut(s)	243, 355
NdeII	GATC	2 cut(s)	247, 414
NlaIII	CATG	8 cut(s)	16, 175, 247, 319, 359, 379, 415, 425
NlaIV	GGNNCC	4 cut(s)	227, 249, 297, 361
PagI	TCATGA	2 cut(s)	171, 421
PceI	AGGCCT	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	66
PflMI	CCANNNNNTGG	2 cut(s)	131, 220
PkrI	GCNGC	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	106, 298
PspGI	CCWGG	2 cut(s)	106, 298
PspN4I	GGNNCC	4 cut(s)	227, 249, 297, 361
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	2 cut(s)	17, 272
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	247, 414
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	108, 300
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	3 cut(s)	163, 194, 258
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	17, 272
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	146, 442
SseBI	AGGCCT	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	106, 298
StyI	CCWWGG	2 cut(s)	243, 355
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	2 cut(s)	146, 442
TatI	WGTACW	1 cut(s)	372
TscAI	CASTG	2 cut(s)	148, 240
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	160, 188, 290, 294
TspRI	CASTG	2 cut(s)	148, 240
Van91I	CCANNNNNTGG	2 cut(s)	131, 220
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.