Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

120737 .. 132222

Gene Structure 11486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGCAGGGCTCGTCGCAGAGCTCTGCGGCGGCTCAGCCGGAGGCGATATTGCAATGGCTTCAGAAGGAAATGGGGTACCGGCCTTTGGGTCCGTACAGTGCTGCTTCTAGCAAATCGCAATTGCCCTCAATCGACTCGATGAGGAAGATTTGCCGTGGGAACATGATACCCATTTGGAATTTCTTGATTACCCGCGTGAAGTCGGAGAACACTGTGAAGAATATTCGGAGGAATATAACGGTTCACGGTGGTGGCGGTGGCGGGGATGGTGGCGCATTGGTAAAATCGGGGAAGGAGGAGGGTACCAGGAGTAAAGGAGGTAGGAGAAAGGAGAAGCTTGGGGAGGGTACGAGTGCGGCGGAGACTAGAGAGGCCGCGCTGCAAGAGAGGGACTTGGCGGCAAAGGAGGTGGAGAAGTTGAGGAACATTGTGAAGAGGCAGAGGAAGGATTTGAAGGCCAGAATGTTGGAGGTTTCAAGGGCCGAGGCCGAACGGAAGAGGATGCTTGATGAACGCTCTAAAAAAAGGCATAAGCAAGTAATGTTGGAGGCTTATTATCAACAGTGTGATGAAGCGGAAAAGATATTTGCAGAGTATCATAAACGTCTTCGTTATTATGTTAATCAAGCAAGAGATGCTCAAAGGTCTGGTGTTGATTCATCTCTTGAATTGGTTAACAGTTTTGGTTCAAATAGTGAAAAGGAAGCTGTTTATTCAACTCTTAAGGGCAGTAAAGCGGCAGAAGATGTACTTCTTATTGAAACCACTAAGGAAAGAAATATCCGAAATGCCTGTGAATCTCTTGCAGCACATATGATAGAAAAAATTCAATGTTCTTTTCCCGCATATGAAGGAAGTGGTATTCATTTGAATCCTCAGTTAGAAGCAGCCAGGTTAGGCTTTAATTTTGATGGGGAATTACCCGATGAGGTTAGAGCTGCAATTGTGAATGGGTTGAAGAATCCTCCTCAATTGCTTCAGGCAATTACTTCATACACATCACGGTTGAAATCTCTAATTTCCAGAGAGATAGAGAAAATTGATGTTAGAGCTGATGCAGAAACTTTGAGGTACAAGTATGAGAACAACCGAGTTATGGATGTTTCTTCTCCTGATGTGAGTTCACCATTACACTATCAACTATATGGTAATGGAAAGATAGGAGAGCGGATGCACTTTCTAGAGGAACTCAACTTCTTGAAAGACAGAAAGCACATGTTCAGCAATTTTTGGCTACTGAAGATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS5

Protein Analysis

417

Amino Acids

47.06

Weight (kDa)

9.42

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS5	PF14817	13 - 389	2.4e-113	HAUS augmin-like complex subunit 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	75, 302
AccB1I	GGYRCC	2 cut(s)	75, 302
AccBSI	CCGCTC	1 cut(s)	1168
AccII	CGCG	2 cut(s)	195, 377
AcsI	RAATTY	2 cut(s)	178, 825
AcuI	CTGAAG	2 cut(s)	44, 962
AfaI	GTAC	6 cut(s)	77, 95, 304, 349, 750, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	85, 1096
AflII	CTTAAG	1 cut(s)	722
AflIII	ACRYGT	1 cut(s)	1215
AjnI	CCWGG	2 cut(s)	305, 890
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	5 cut(s)	21, 337, 707, 938, 1052
AluI	AGCT	5 cut(s)	21, 337, 707, 938, 1052
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	356
AoxI	GGCC	5 cut(s)	80, 372, 456, 480, 486
ApeKI	GCWGC	5 cut(s)	101, 379, 806, 887, 938
ApoI	RAATTY	2 cut(s)	178, 825
Asp700I	GAANNNNTTC	1 cut(s)	825
Asp718I	GGTACC	2 cut(s)	75, 302
AspLEI	GCGC	2 cut(s)	275, 379
AspS9I	GGNCC	2 cut(s)	89, 480
AsuHPI	GGTGA	1 cut(s)	1116
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	2 cut(s)	75, 302
BanII	GRGCYC	2 cut(s)	11, 23
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	5 cut(s)	88, 366, 818, 899, 925
BccI	CCATC	2 cut(s)	260, 905
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	2 cut(s)	307, 892
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	3 cut(s)	108, 366, 1181
BfrI	CTTAAG	1 cut(s)	722
BlpI	GCTNAGC	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	307, 892
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 480
BmiI	GGNNCC	3 cut(s)	77, 90, 304
BmrFI	CCNGG	2 cut(s)	307, 892
BmsI	GCATC	5 cut(s)	492, 625, 1045, 1161, 1233
BpiI	GAAGAC	1 cut(s)	599
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	154, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 1096
Bse118I	RCCGGY	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	307, 892
BseDI	CCNNGG	2 cut(s)	154, 483
BseGI	GGATG	4 cut(s)	271, 507, 1105, 1176
BseLI	CCNNNNNNNGG	2 cut(s)	85, 1096
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	47, 890
BseRI	GAGGAG	2 cut(s)	311, 957
BseXI	GCAGC	5 cut(s)	88, 366, 818, 899, 925
Bsh1236I	CGCG	2 cut(s)	195, 377
BshFI	GGCC	5 cut(s)	82, 374, 458, 482, 488
BshNI	GGYRCC	2 cut(s)	75, 302
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	38, 79
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	85, 1096
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	5 cut(s)	82, 374, 458, 482, 488
Bsp1286I	GDGCHC	2 cut(s)	11, 23
Bsp1720I	GCTNAGC	1 cut(s)	33
BspANI	GGCC	5 cut(s)	82, 374, 458, 482, 488
BspCNI	CTCAG	2 cut(s)	46, 889
BspFNI	CGCG	2 cut(s)	195, 377
BspLI	GGNNCC	3 cut(s)	77, 90, 304
BspT107I	GGYRCC	2 cut(s)	75, 302
BspTI	CTTAAG	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	1168
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	154, 483
Bst2UI	CCWGG	2 cut(s)	307, 892
Bst4CI	ACNGT	7 cut(s)	98, 214, 241, 248, 564, 680, 1005
Bst6I	CTCTTC	2 cut(s)	428, 491
BstAFI	CTTAAG	1 cut(s)	722
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstDEI	CTNAG	3 cut(s)	33, 768, 876
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	4 cut(s)	271, 507, 1105, 1176
BstFNI	CGCG	2 cut(s)	195, 377
BstHHI	GCGC	2 cut(s)	275, 379
BstMAI	GTCTC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	2 cut(s)	307, 892
BstNSI	RCATGY	1 cut(s)	1219
BstSCI	CCNGG	2 cut(s)	305, 890
BstUI	CGCG	2 cut(s)	195, 377
BstV1I	GCAGC	5 cut(s)	88, 366, 818, 899, 925
BstV2I	GAAGAC	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	82, 374, 458, 482, 488
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	271, 507, 1105, 1176
BtsIMutI	CAGTG	4 cut(s)	103, 210, 569, 1246
CfoI	GCGC	2 cut(s)	275, 379
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	89, 480
Csp6I	GTAC	6 cut(s)	76, 94, 303, 348, 749, 1072
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	2 cut(s)	163, 1216
CviQI	GTAC	6 cut(s)	76, 94, 303, 348, 749, 1072
DdeI	CTNAG	3 cut(s)	33, 768, 876
Eam1104I	CTCTTC	2 cut(s)	428, 491
EarI	CTCTTC	2 cut(s)	428, 491
EciI	GGCGGA	1 cut(s)	374
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	11, 23
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	44, 962
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	305, 890
EcoT38I	GRGCYC	2 cut(s)	11, 23
FaeI	CATG	2 cut(s)	166, 1219
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	162, 1215
FauI	CCCGC	3 cut(s)	200, 254, 850
FauNDI	CATATG	2 cut(s)	813, 847
FokI	GGATG	4 cut(s)	278, 514, 1112, 1183
FriOI	GRGCYC	2 cut(s)	11, 23
FspBI	CTAG	3 cut(s)	108, 366, 1181
GlaI	GCGC	2 cut(s)	274, 378
HaeIII	GGCC	5 cut(s)	82, 374, 458, 482, 488
HapII	CCGG	2 cut(s)	38, 79
HhaI	GCGC	2 cut(s)	275, 379
Hin1II	CATG	2 cut(s)	166, 1219
Hin6I	GCGC	2 cut(s)	273, 377
HinP1I	GCGC	2 cut(s)	273, 377
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	5 cut(s)	134, 656, 797, 871, 961
HpaI	GTTAAC	1 cut(s)	676
HpaII	CCGG	2 cut(s)	38, 79
HphI	GGTGA	1 cut(s)	1116
Hpy166II	GTNNAC	3 cut(s)	244, 676, 1124
Hpy188I	TCNGA	4 cut(s)	63, 205, 228, 785
Hpy188III	TCNNGA	6 cut(s)	184, 665, 1023, 1112, 1181, 1198
Hpy8I	GTNNAC	3 cut(s)	244, 676, 1124
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	58, 286, 439, 448, 845
HpyCH4III	ACNGT	7 cut(s)	98, 214, 241, 248, 564, 680, 1005
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	9 cut(s)	4, 52, 382, 590, 806, 941, 1058, 1174, 1246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	3 cut(s)	33, 768, 876
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	2 cut(s)	166, 1219
HspAI	GCGC	2 cut(s)	273, 377
KpnI	GGTACC	2 cut(s)	79, 306
KspAI	GTTAAC	1 cut(s)	676
Lsp1109I	GCAGC	5 cut(s)	88, 366, 818, 899, 925
LweI	GCATC	5 cut(s)	492, 625, 1045, 1161, 1233
MaeI	CTAG	3 cut(s)	108, 366, 1181
MaeII	ACGT	1 cut(s)	604
MbiI	CCGCTC	1 cut(s)	1168
MboII	GAAGA	8 cut(s)	157, 229, 445, 508, 599, 755, 970, 1098
MfeI	CAATTG	3 cut(s)	119, 942, 971
MhlI	GDGCHC	2 cut(s)	11, 23
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	3 cut(s)	183, 447, 525
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	4 cut(s)	621, 675, 723, 903
MslI	CAYNNNNRTG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	722
MspI	CCGG	2 cut(s)	38, 79
MspR9I	CCNGG	2 cut(s)	307, 892
MunI	CAATTG	3 cut(s)	119, 942, 971
MvaI	CCWGG	2 cut(s)	307, 892
MvnI	CGCG	2 cut(s)	195, 377
MwoI	GCNNNNNNNGC	1 cut(s)	635
NdeI	CATATG	2 cut(s)	813, 847
NlaIII	CATG	2 cut(s)	166, 1219
NlaIV	GGNNCC	3 cut(s)	77, 90, 304
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	1 cut(s)	1219
OliI	CACNNNNGTG	1 cut(s)	249
PciI	ACATGT	1 cut(s)	1215
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	4 cut(s)	656, 797, 871, 961
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	1215
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	305, 890
PspGI	CCWGG	2 cut(s)	305, 890
PspN4I	GGNNCC	3 cut(s)	77, 90, 304
PspPI	GGNCC	2 cut(s)	89, 480
RsaI	GTAC	6 cut(s)	77, 95, 304, 349, 750, 1073
RsaNI	GTAC	6 cut(s)	76, 94, 303, 348, 749, 1072
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	621, 675, 723, 903
Sau96I	GGNCC	2 cut(s)	89, 480
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	307, 892
SduI	GDGCHC	2 cut(s)	11, 23
SfaNI	GCATC	5 cut(s)	492, 625, 1045, 1161, 1233
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	3 cut(s)	108, 366, 1181
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	305, 890
TaaI	ACNGT	7 cut(s)	98, 214, 241, 248, 564, 680, 1005
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	2 cut(s)	132, 137
TatI	WGTACW	1 cut(s)	748
TauI	GCSGC	6 cut(s)	29, 32, 359, 377, 401, 740
TfiI	GAWTC	4 cut(s)	656, 797, 871, 961
Tru1I	TTAA	4 cut(s)	621, 675, 723, 903
Tru9I	TTAA	4 cut(s)	621, 675, 723, 903
TscAI	CASTG	3 cut(s)	103, 217, 569
TseI	GCWGC	5 cut(s)	101, 379, 806, 887, 938
TspDTI	ATGAA	6 cut(s)	525, 585, 648, 854, 864, 981
TspGWI	ACGGA	2 cut(s)	81, 508
TspRI	CASTG	3 cut(s)	103, 217, 569
Vha464I	CTTAAG	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	178, 825
XbaI	TCTAGA	1 cut(s)	1180
XceI	RCATGY	1 cut(s)	1219
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	3 cut(s)	108, 366, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.