Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

379984 .. 380814

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTATTGCAAGCGTGGAATGATGGAAGAGGCAGAAAAGATACATGACAGAACAGAAGAACAAACCATGGTTTCTTGGAATGTAATCATATCTGGCTTCTCGCTGCATAAGCAAAATGAGGAAGAGCAGAGATTTTTCTCTCTGATGTTGGAAATGGGTGCAGAACCTGATAACTTCACATACGCGACGGTTCTTGATACCTGTGCTAATTTGGCTACTGTTGAACTTGGGAGGCAGATCCATGCTCAGATTAGCAAGCATGAATTGCAGTCAGATGTATACATAACTAGCACTCTTGTCGATATGTACTCAAAGTGTGGAAACATGCAAGATTCTCATTTAATGTTCAAGAAAGCACCTAAGCGGGATGCTGTCACATGGAACGCCATGATATCTGGCTATGCAAACTTTGGCCTTGGAGAAGACGCTCTTAGTATTTTTGAGTACATGCAGCTTGAGAACGTGGAGCCAAACCATGCAACTTTTGTTTCAGTCCTCCGAGCTTGTGGACATATTGGGCACGCTGAAAAAGGTTTACACTACTTCCGCACAATGCTTAGCACCTATGGTTTACATCCTCAGTGGGAGCATTACTCATGTATCTTGGATATTATAGGGAGGTCAGGCCAAGTTTGTGAGGCCTTGAGGCTTATTGAAGACATGCCTTTCGAAGCCGATGATGTTATATCAAGAACTCTGCTTAGTATTTGCAAGCTCCATGGGAATGTAGAAGTGGCTGAAAAAGCAGCAAGCACTATTCTGCAACTGGATCCTCAAGATTCGTCCACCTATGTTCTGCTATCAAATATATACGCGGAAGCTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

277

Amino Acids

31.21

Weight (kDa)

5.04

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 70	7.8e-09	PPR repeat family
PPR_3	PF13812	122 - 170	6.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	123 - 170	1.7e-12	PPR repeat family
PPR	PF01535	125 - 154	5.8e-08	PPR repeat
E_motif	PF20431	240 - 275	4e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	185, 815
AciI	CCGC	3 cut(s)	364, 547, 815
AclWI	GGATC	3 cut(s)	232, 764, 777
AfaI	GTAC	2 cut(s)	308, 446
AgsI	TTSAA	3 cut(s)	224, 349, 656
AluBI	AGCT	4 cut(s)	454, 503, 715, 821
AluI	AGCT	4 cut(s)	454, 503, 715, 821
AlwI	GGATC	3 cut(s)	232, 764, 777
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	412, 625, 639
ApeKI	GCWGC	3 cut(s)	103, 451, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AsuII	TTCGAA	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	522
BaeI	ACNNNNGTAYC	2 cut(s)	583, 616
BamHI	GGATCC	1 cut(s)	769
BbsI	GAAGAC	2 cut(s)	429, 663
BbvI	GCAGC	3 cut(s)	90, 463, 758
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	3 cut(s)	104, 452, 747
BlpI	GCTNAGC	1 cut(s)	557
BlsI	GCNGC	3 cut(s)	105, 453, 748
BmiI	GGNNCC	2 cut(s)	468, 771
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	429, 663
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	557
Bpu14I	TTCGAA	1 cut(s)	669
BpuEI	CTTGAG	3 cut(s)	476, 664, 759
BsaJI	CCNNGG	3 cut(s)	66, 415, 718
Bse1I	ACTGG	1 cut(s)	771
BseDI	CCNNGG	3 cut(s)	66, 415, 718
BseGI	GGATG	2 cut(s)	373, 574
BseMII	CTCAG	2 cut(s)	260, 593
BseNI	ACTGG	1 cut(s)	771
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	3 cut(s)	90, 463, 758
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	185, 815
BshFI	GGCC	3 cut(s)	414, 627, 641
BsnI	GGCC	3 cut(s)	414, 627, 641
Bsp119I	TTCGAA	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	237, 769
Bsp1720I	GCTNAGC	1 cut(s)	557
Bsp19I	CCATGG	2 cut(s)	66, 718
BspACI	CCGC	3 cut(s)	364, 547, 815
BspANI	GGCC	3 cut(s)	414, 627, 641
BspCNI	CTCAG	2 cut(s)	259, 592
BspFNI	CGCG	2 cut(s)	185, 815
BspLI	GGNNCC	2 cut(s)	468, 771
BspPI	GGATC	3 cut(s)	232, 764, 777
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	3 cut(s)	66, 415, 718
BssMI	GATC	2 cut(s)	237, 769
BssNAI	GTATAC	1 cut(s)	280
BssT1I	CCWWGG	3 cut(s)	66, 415, 718
Bst1107I	GTATAC	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	190, 220
Bst6I	CTCTTC	2 cut(s)	21, 117
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	5 cut(s)	11, 257, 522, 713, 751
BstDEI	CTNAG	6 cut(s)	246, 360, 431, 557, 579, 701
BstDSI	CCRYGG	2 cut(s)	66, 718
BstF5I	GGATG	2 cut(s)	373, 574
BstFNI	CGCG	2 cut(s)	185, 815
BstKTI	GATC	2 cut(s)	240, 772
BstMBI	GATC	2 cut(s)	237, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 212, 265, 743
BstNSI	RCATGY	3 cut(s)	328, 451, 664
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	2 cut(s)	185, 815
BstV1I	GCAGC	3 cut(s)	90, 463, 758
BstV2I	GAAGAC	2 cut(s)	429, 663
BstX2I	RGATCY	2 cut(s)	237, 769
BstYI	RGATCY	2 cut(s)	237, 769
BstZ17I	GTATAC	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	414, 627, 641
BtgI	CCRYGG	2 cut(s)	66, 718
BtsCI	GGATG	2 cut(s)	373, 574
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	5 cut(s)	11, 257, 522, 713, 751
CaiI	CAGNNNCTG	1 cut(s)	167
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	307, 445
CviQI	GTAC	2 cut(s)	307, 445
DdeI	CTNAG	6 cut(s)	246, 360, 431, 557, 579, 701
DpnI	GATC	2 cut(s)	239, 771
DpnII	GATC	2 cut(s)	237, 769
Eam1104I	CTCTTC	2 cut(s)	21, 117
EarI	CTCTTC	2 cut(s)	21, 117
Eco130I	CCWWGG	3 cut(s)	66, 415, 718
Eco147I	AGGCCT	1 cut(s)	641
Eco32I	GATATC	1 cut(s)	393
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	66, 415, 718
ErhI	CCWWGG	3 cut(s)	66, 415, 718
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FauI	CCCGC	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	104, 452, 747
FokI	GGATG	2 cut(s)	380, 561
Fsp4HI	GCNGC	3 cut(s)	104, 452, 747
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	3 cut(s)	104, 452, 747
HaeIII	GGCC	3 cut(s)	414, 627, 641
HgaI	GACGC	1 cut(s)	434
HinfI	GANTC	2 cut(s)	332, 779
Hpy166II	GTNNAC	5 cut(s)	280, 509, 536, 572, 786
Hpy188I	TCNGA	4 cut(s)	144, 249, 274, 500
Hpy188III	TCNNGA	4 cut(s)	194, 349, 690, 776
Hpy8I	GTNNAC	5 cut(s)	280, 509, 536, 572, 786
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	190, 220
HpyCH4IV	ACGT	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 212, 265, 743
HpyF3I	CTNAG	6 cut(s)	246, 360, 431, 557, 579, 701
HpySE526I	ACGT	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	237, 769
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	466, 586, 720
LpnPI	CCDG	7 cut(s)	78, 180, 214, 381, 609, 752, 807
Lsp1109I	GCAGC	3 cut(s)	90, 463, 758
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	2 cut(s)	239, 771
MboI	GATC	2 cut(s)	237, 769
MboII	GAAGA	5 cut(s)	38, 68, 134, 434, 668
MflI	RGATCY	2 cut(s)	237, 769
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	2 cut(s)	208, 263
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	9 cut(s)	22, 112, 225, 506, 588, 612, 631, 639, 783
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	723
MvnI	CGCG	2 cut(s)	185, 815
MwoI	GCNNNNNNNGC	4 cut(s)	109, 212, 265, 743
NcoI	CCATGG	2 cut(s)	66, 718
NdeII	GATC	2 cut(s)	237, 769
NlaIV	GGNNCC	2 cut(s)	468, 771
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	3 cut(s)	328, 451, 664
NspV	TTCGAA	1 cut(s)	669
PceI	AGGCCT	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	332, 779
PkrI	GCNGC	3 cut(s)	105, 453, 748
PspN4I	GGNNCC	2 cut(s)	468, 771
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	237, 769
RsaI	GTAC	2 cut(s)	308, 446
RsaNI	GTAC	2 cut(s)	307, 445
RseI	CAYNNNNRTG	1 cut(s)	723
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	3 cut(s)	104, 452, 747
Sau3AI	GATC	2 cut(s)	237, 769
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	3 cut(s)	455, 643, 774
SmoI	CTYRAG	3 cut(s)	455, 643, 774
Sse9I	AATT	2 cut(s)	208, 263
SseBI	AGGCCT	1 cut(s)	641
SsiI	CCGC	3 cut(s)	364, 547, 815
SspMI	CTAG	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	641
StyI	CCWWGG	3 cut(s)	66, 415, 718
TaaI	ACNGT	2 cut(s)	190, 220
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	300, 669
TasI	AATT	2 cut(s)	208, 263
TatI	WGTACW	2 cut(s)	306, 444
TfiI	GAWTC	2 cut(s)	332, 779
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	103, 451, 746
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	587
XceI	RCATGY	3 cut(s)	328, 451, 664
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.