Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

384488 .. 385598

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTTTTGACATTGATGTGGTAACTGGAAGTGCTTTAGTAGATATGTATGGGAAGTGTAAGCAATTAGATAATGCACTCAAAGCCTTCCGTGAATTACCCAAAAAGAATTGGGTTTCTTCGAGCACGGTAATTGCAGGTTCTTTTCAGAATGATCAGTTCGTTAAGGGTATAGAACTGTTTAATGAGATGCAGAAAGCTGGAGTCAGAGTGAGCCAATCTACGTATGCTAGTGTTTTCAGGTCCTGTGCAGGATTATCGGCATATAGTGTTAGGCACTCTCATGGGCATGCTATAAAGACGGACTTCCAATTTGATGTCATAGTTGGAACTGCCACATTGGACATGTATGCAAAATGTGATAGGATGTCTGATGCTAGAAAGATATTCGACTCGATGTCAAACCGGAGTTTACAGTCATATAATGCAATTATTGTCGGCTATGCTCGAAACGAGCAAGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

156

Amino Acids

17.21

Weight (kDa)

8.77

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	39 - 84	2.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	345
AhdI	GACNNNNNGTC	1 cut(s)	397
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspS9I	GGNCC	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BclI	TGATCA	1 cut(s)	154
BfaI	CTAG	2 cut(s)	231, 378
BfuAI	ACCTGC	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	243
BmsI	GCATC	2 cut(s)	180, 364
BpmI	CTGGAG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse1I	ACTGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	130, 180, 417
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	293, 349
BstSNI	TACGTA	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	243
CviAII	CATG	3 cut(s)	284, 290, 346
CviJI	RGCY	4 cut(s)	86, 200, 216, 441
CviKI_1	RGCY	4 cut(s)	86, 200, 216, 441
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	397
Eam1105I	GACNNNNNGTC	1 cut(s)	397
Eco105I	TACGTA	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	243
FaeI	CATG	3 cut(s)	287, 293, 349
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	3 cut(s)	283, 289, 345
FbaI	TGATCA	1 cut(s)	154
FokI	GGATG	1 cut(s)	379
FspBI	CTAG	2 cut(s)	231, 378
GsuI	CTGGAG	1 cut(s)	222
HapII	CCGG	1 cut(s)	406
Hin1II	CATG	3 cut(s)	287, 293, 349
HinfI	GANTC	2 cut(s)	204, 392
HpaII	CCGG	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	150, 209, 373
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	3 cut(s)	130, 180, 417
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	77, 137, 193, 251, 353, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	287, 293, 349
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	12, 123, 186, 226, 237, 259, 419
LweI	GCATC	2 cut(s)	180, 364
MaeI	CTAG	2 cut(s)	231, 378
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	6 cut(s)	65, 95, 109, 132, 311, 429
MlyI	GAGTC	2 cut(s)	213, 386
MmeI	TCCRAC	1 cut(s)	307
MseI	TTAA	3 cut(s)	165, 183, 466
MslI	CAYNNNNRTG	3 cut(s)	17, 282, 288
MspI	CCGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	287, 293, 349
NspI	RCATGY	2 cut(s)	293, 349
PaeI	GCATGC	1 cut(s)	293
PciI	ACATGT	1 cut(s)	345
PleI	GAGTC	2 cut(s)	212, 386
PpsI	GAGTC	2 cut(s)	212, 386
Ppu21I	YACGTR	1 cut(s)	225
PpuMI	RGGWCCY	1 cut(s)	243
PscI	ACATGT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	243
PspPPI	RGGWCCY	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	246
RseI	CAYNNNNRTG	3 cut(s)	17, 282, 288
SaqAI	TTAA	3 cut(s)	165, 183, 466
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	213, 386
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	5 cut(s)	142, 202, 227, 245, 463
SfaNI	GCATC	2 cut(s)	180, 364
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	3 cut(s)	17, 282, 288
SnaBI	TACGTA	1 cut(s)	225
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	6 cut(s)	65, 95, 109, 132, 311, 429
SspMI	CTAG	2 cut(s)	231, 378
TaaI	ACNGT	3 cut(s)	130, 180, 417
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	4 cut(s)	122, 390, 395, 448
TasI	AATT	6 cut(s)	65, 95, 109, 132, 311, 429
Tru1I	TTAA	3 cut(s)	165, 183, 466
Tru9I	TTAA	3 cut(s)	165, 183, 466
TspGWI	ACGGA	2 cut(s)	80, 317
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	2 cut(s)	293, 349
XspI	CTAG	2 cut(s)	231, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.