Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

703256 .. 704910

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTAAAAATAGTAAGTTAGATGTAGAAACAGGACATATTGATTTAAACAAAATTTCCCAACATCAAAAGCACAGTTACGAAGGGAAATTCCCACTTCGTTTTCACACGCTCTGCCTGCTTCCCGTCTTCTCCCCCCAAAACCCTCACTCTCCGCCCCCAATGGACCCTCGCCGGCCCCCGCGCACGGTCAGCGACCCCAAGGTCCGACAAGTCGGCTTCTTCGCCTCGCCCGAGCCCATAGCCTACTCCTCCTCTCCTCCCGTCTCCGGCATCTCCCCTTCCGGTAACTCCCTCTCTCCGGTAATGATTCCCCCGCCGCGTCACTCCTCCGACACCACACGTCCGGTTCTTTTCCCAGCCTCCTCGGCCCGTCGAGAGTCCATACTCGCCGGGAGTTACAACAACTCTTCTGAGTTCTTCCCCGCCTCGCCTCCTACTGCTTCGTCGTCCTACGGAATTGTGATGAGGAATGGCGAGTTCCTAAACGACGCCGTTATGTCACCGGGTAGAGCATTCAGAGGTGTAAGAACCGCTGCCGGTTTGACGACGTCATCTTCGTTTCCTGGTGGAGGGTTTGATCTGACGGCTGCCGTGAAGGCGAGTAGCGTCCCCGCGAGTGGGTTGATGACGGTCTCCGTGGTCAAGATGCCTTCTGGGATTTCTGAGAAAGATGTTGATGCGTCAGTGGAAGTGCAAACCGAGCGAGCTGCAAATTCGAAGCCACTGAAGGAGAAAACCACGAAAGCCGAAAGGCGGGCTGTTCAGGAAGCTCAACGAGCAGCTAAGGCTGCCGCAAAAGCTGAAGGAGGTAAAACACCTTCTGTTGCTGCTTCTGCTTCGGCAGCAGCAAATGTGAAACTGCCTAAAGCCACGAAGCTCGTGTCACAATCATCTGTGGCGGTATCTGAGAAGAAGGGCGGTGGCGGAGGTGGTGGCAGTGAACATCTGCCGGAGAAAGAGAGGAAGAAAGAAGTTCCTCATCCGCGAATGCAATATGATGATACAAGTCGTGTGGAGAAGGCGAAAAGGCGTTCAGTGGTCAAGCAAACTGAGGCCAGGAACAGGGTTGAGTTGTTCAGGCATTTGCCTCAATACGAGCATGGAACTCAGCTTCCTGATCGATCGAGTCTAAGTTTTTCCAACTTGATCCTGTGCATCCTGCTGTTTATAAGGTTGGCTTACAGTATTTATCAGGAGATATATCGGGTGGCAATGCTCGTTGTATTGCCATGCTTTTGGCATTTCAGGAAGCCATTAAAGACTATTCAACACCACCAGAGAAAAACCTCAGTAGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

435

Amino Acids

47.04

Weight (kDa)

10.06

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1172
AasI	GACNNNNNNGTC	1 cut(s)	203
AatII	GACGTC	1 cut(s)	554
AccII	CGCG	4 cut(s)	184, 322, 617, 988
AclWI	GGATC	1 cut(s)	1144
AcsI	RAATTY	3 cut(s)	54, 89, 715
AcuI	CTGAAG	2 cut(s)	749, 825
AcyI	GRCGYC	2 cut(s)	492, 551
AfiI	CCNNNNNNNGG	9 cut(s)	187, 269, 301, 572, 620, 621, 756, 1065, 1296
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	1271
AjiI	CACGTC	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	565, 1058
AloI	GAACNNNNNNTCC	2 cut(s)	1099, 1131
AluBI	AGCT	6 cut(s)	710, 773, 785, 803, 880, 1114
AluI	AGCT	6 cut(s)	710, 773, 785, 803, 880, 1114
Alw26I	GTCTC	2 cut(s)	271, 640
AlwI	GGATC	1 cut(s)	1144
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	176, 369, 1056
ApeKI	GCWGC	8 cut(s)	536, 590, 710, 782, 791, 830, 845, 848
ApoI	RAATTY	3 cut(s)	54, 89, 715
ArsI	GACNNNNNNTTYG	4 cut(s)	541, 573, 869, 901
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	4 cut(s)	166, 177, 205, 370
AsuHPI	GGTGA	1 cut(s)	495
AsuII	TTCGAA	1 cut(s)	719
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	166, 205
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	805, 837
BauI	CACGAG	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	8 cut(s)	523, 577, 697, 778, 794, 817, 857, 860
BceAI	ACGGC	3 cut(s)	479, 578, 603
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	2 cut(s)	567, 1060
BcnI	CCSGG	2 cut(s)	394, 507
BcoDI	GTCTC	2 cut(s)	271, 640
BglI	GCCNNNNNGGC	2 cut(s)	368, 599
Bme1390I	CCNGG	4 cut(s)	394, 507, 567, 1060
Bme18I	GGWCC	2 cut(s)	166, 205
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	344
BmgT120I	GGNCC	4 cut(s)	166, 177, 205, 370
BmiI	GGNNCC	2 cut(s)	168, 179
BmrFI	CCNGG	4 cut(s)	394, 507, 567, 1060
BmsI	GCATC	4 cut(s)	282, 639, 670, 1167
BpiI	GAAGAC	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	719
BpuMI	CCSGG	2 cut(s)	394, 507
Bsa29I	ATCGAT	1 cut(s)	1123
BsaHI	GRCGYC	2 cut(s)	492, 551
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	201, 366, 639
BsaWI	WCCGGW	3 cut(s)	284, 301, 346
Bsc4I	CCNNNNNNNGG	9 cut(s)	187, 269, 301, 572, 620, 621, 756, 1065, 1296
Bse118I	RCCGGY	2 cut(s)	174, 539
Bse3DI	GCAATG	1 cut(s)	1221
BseBI	CCWGG	2 cut(s)	567, 1060
BseCI	ATCGAT	1 cut(s)	1123
BseDI	CCNNGG	3 cut(s)	201, 366, 639
BseGI	GGATG	2 cut(s)	982, 1158
BseLI	CCNNNNNNNGG	9 cut(s)	187, 269, 301, 572, 620, 621, 756, 1065, 1296
BseMI	GCAATG	1 cut(s)	1221
BseMII	CTCAG	6 cut(s)	405, 657, 900, 1044, 1124, 1305
BseRI	GAGGAG	5 cut(s)	241, 244, 249, 319, 355
BseXI	GCAGC	8 cut(s)	523, 577, 697, 778, 794, 817, 857, 860
BseYI	CCCAGC	1 cut(s)	358
Bsh1236I	CGCG	4 cut(s)	184, 322, 617, 988
Bsh1285I	CGRYCG	1 cut(s)	1127
BshFI	GGCC	3 cut(s)	178, 371, 1058
BshVI	ATCGAT	1 cut(s)	1123
BsiEI	CGRYCG	1 cut(s)	1127
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	9 cut(s)	175, 270, 285, 302, 347, 393, 506, 540, 953
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	9 cut(s)	187, 269, 301, 572, 620, 621, 756, 1065, 1296
BsmAI	GTCTC	2 cut(s)	271, 640
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	2 cut(s)	515, 996
BsnI	GGCC	3 cut(s)	178, 371, 1058
Bso31I	GGTCTC	1 cut(s)	640
BsoBI	CYCGRG	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	580, 1120, 1124, 1149
BspANI	GGCC	3 cut(s)	178, 371, 1058
BspCNI	CTCAG	6 cut(s)	406, 658, 901, 1045, 1123, 1304
BspDI	ATCGAT	1 cut(s)	1123
BspFNI	CGCG	4 cut(s)	184, 322, 617, 988
BspLI	GGNNCC	2 cut(s)	168, 179
BspPI	GGATC	1 cut(s)	1144
BspT104I	TTCGAA	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	1221
BsrFI	RCCGGY	2 cut(s)	174, 539
BssAI	RCCGGY	2 cut(s)	174, 539
BssECI	CCNNGG	3 cut(s)	201, 366, 639
BssMI	GATC	4 cut(s)	580, 1120, 1124, 1149
BssNI	GRCGYC	2 cut(s)	492, 551
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	2 cut(s)	567, 1060
Bst4CI	ACNGT	4 cut(s)	77, 190, 634, 1187
Bst6I	CTCTTC	1 cut(s)	415
BstACI	GRCGYC	2 cut(s)	492, 551
BstBI	TTCGAA	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	119, 176, 708, 759
BstDEI	CTNAG	8 cut(s)	414, 666, 786, 909, 1053, 1110, 1133, 1291
BstDSI	CCRYGG	1 cut(s)	639
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	982, 1158
BstFNI	CGCG	4 cut(s)	184, 322, 617, 988
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	4 cut(s)	583, 1123, 1127, 1152
BstMAI	GTCTC	2 cut(s)	271, 640
BstMBI	GATC	4 cut(s)	580, 1120, 1124, 1149
BstMCI	CGRYCG	1 cut(s)	1127
BstNI	CCWGG	2 cut(s)	567, 1060
BstSCI	CCNGG	4 cut(s)	392, 505, 565, 1058
BstUI	CGCG	4 cut(s)	184, 322, 617, 988
BstV1I	GCAGC	8 cut(s)	523, 577, 697, 778, 794, 817, 857, 860
BstV2I	GAAGAC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	1239
Bsu15I	ATCGAT	1 cut(s)	1123
BsuRI	GGCC	3 cut(s)	178, 371, 1058
BsuTUI	ATCGAT	1 cut(s)	1123
BtgI	CCRYGG	1 cut(s)	639
BtrI	CACGTC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	982, 1158
BtsI	GCAGTG	1 cut(s)	946
BtsIMutI	CAGTG	4 cut(s)	693, 725, 946, 1044
Cac8I	GCNNGC	4 cut(s)	119, 176, 708, 759
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	2 cut(s)	174, 539
Cfr13I	GGNCC	4 cut(s)	166, 177, 205, 370
ClaI	ATCGAT	1 cut(s)	1123
CseI	GACGC	4 cut(s)	311, 500, 598, 672
CspCI	CAANNNNNGTGG	2 cut(s)	996, 1031
CviAII	CATG	2 cut(s)	1103, 1233
DdeI	CTNAG	8 cut(s)	414, 666, 786, 909, 1053, 1110, 1133, 1291
DpnI	GATC	4 cut(s)	582, 1122, 1126, 1151
DpnII	GATC	4 cut(s)	580, 1120, 1124, 1149
DraI	TTTAAA	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
EciI	GGCGGA	2 cut(s)	144, 942
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	166, 205
Eco57I	CTGAAG	2 cut(s)	749, 825
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	565, 1058
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	2 cut(s)	1106, 1236
FaiI	YATR	9 cut(s)	39, 242, 386, 500, 999, 1104, 1172, 1204, 1234
FalI	AAGNNNNNCTT	2 cut(s)	1165, 1197
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	2 cut(s)	1102, 1232
FauI	CCCGC	5 cut(s)	189, 324, 433, 622, 750
FokI	GGATG	2 cut(s)	969, 1145
FriOI	GRGCYC	1 cut(s)	240
GlaI	GCGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	362
HaeIII	GGCC	3 cut(s)	178, 371, 1058
HapII	CCGG	9 cut(s)	175, 270, 285, 302, 347, 393, 506, 540, 953
HgaI	GACGC	4 cut(s)	311, 500, 598, 672
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	2 cut(s)	492, 551
Hin1II	CATG	2 cut(s)	1106, 1236
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	310, 380, 1129
HpaII	CCGG	9 cut(s)	175, 270, 285, 302, 347, 393, 506, 540, 953
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	7 cut(s)	209, 334, 415, 521, 585, 667, 910
Hpy188III	TCNNGA	6 cut(s)	377, 646, 767, 1118, 1196, 1249
Hpy8I	GTNNAC	1 cut(s)	944
Hpy99I	CGWCG	4 cut(s)	378, 451, 494, 553
HpyAV	CCTTC	9 cut(s)	77, 291, 592, 663, 724, 800, 831, 910, 1015
HpyCH4III	ACNGT	4 cut(s)	77, 190, 634, 1187
HpyCH4IV	ACGT	2 cut(s)	343, 551
HpyCH4V	TGCA	4 cut(s)	697, 713, 994, 1158
HpyF3I	CTNAG	8 cut(s)	414, 666, 786, 909, 1053, 1110, 1133, 1291
HpySE526I	ACGT	2 cut(s)	343, 551
Hsp92I	GRCGYC	2 cut(s)	492, 551
Hsp92II	CATG	2 cut(s)	1106, 1236
HspAI	GCGC	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	580, 1120, 1124, 1149
Lsp1109I	GCAGC	8 cut(s)	523, 577, 697, 778, 794, 817, 857, 860
LweI	GCATC	4 cut(s)	282, 639, 670, 1167
MaeII	ACGT	2 cut(s)	343, 551
MaeIII	GTNAC	6 cut(s)	77, 287, 323, 398, 501, 885
MalI	GATC	4 cut(s)	582, 1122, 1126, 1151
MboI	GATC	4 cut(s)	580, 1120, 1124, 1149
MboII	GAAGA	7 cut(s)	121, 214, 402, 412, 549, 925, 979
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	54, 89, 459, 715
MlyI	GAGTC	2 cut(s)	389, 1138
MmeI	TCCRAC	3 cut(s)	232, 357, 1167
MroNI	GCCGGC	1 cut(s)	174
MseI	TTAA	2 cut(s)	47, 1259
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	9 cut(s)	175, 270, 285, 302, 347, 393, 506, 540, 953
MspR9I	CCNGG	4 cut(s)	394, 507, 567, 1060
Mva1269I	GAATGC	2 cut(s)	515, 996
MvaI	CCWGG	2 cut(s)	567, 1060
MvnI	CGCG	4 cut(s)	184, 322, 617, 988
NaeI	GCCGGC	1 cut(s)	176
NciI	CCSGG	2 cut(s)	394, 507
NdeII	GATC	4 cut(s)	580, 1120, 1124, 1149
NgoMIV	GCCGGC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	1106, 1236
NlaIV	GGNNCC	2 cut(s)	168, 179
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	3 cut(s)	323, 501, 885
NspV	TTCGAA	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 557
PctI	GAATGC	2 cut(s)	515, 996
PdiI	GCCGGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	550
Ple19I	CGATCG	1 cut(s)	1127
PleI	GAGTC	2 cut(s)	388, 1137
PpsI	GAGTC	2 cut(s)	388, 1137
PsiI	TTATAA	1 cut(s)	1172
Psp6I	CCWGG	2 cut(s)	565, 1058
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	565, 1058
PspN4I	GGNNCC	2 cut(s)	168, 179
PspPI	GGNCC	4 cut(s)	166, 177, 205, 370
PsyI	GACNNNGTC	1 cut(s)	550
PvuI	CGATCG	1 cut(s)	1127
SaqAI	TTAA	2 cut(s)	47, 1259
Sau3AI	GATC	4 cut(s)	580, 1120, 1124, 1149
Sau96I	GGNCC	4 cut(s)	166, 177, 205, 370
SchI	GAGTC	2 cut(s)	389, 1138
ScrFI	CCNGG	4 cut(s)	394, 507, 567, 1060
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	4 cut(s)	282, 639, 670, 1167
SfuI	TTCGAA	1 cut(s)	719
SinI	GGWCC	2 cut(s)	166, 205
Sse9I	AATT	4 cut(s)	54, 89, 459, 715
StyD4I	CCNGG	4 cut(s)	392, 505, 565, 1058
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	77, 190, 634, 1187
TaiI	ACGT	2 cut(s)	346, 554
TaqI	TCGA	4 cut(s)	376, 719, 1123, 1127
TasI	AATT	4 cut(s)	54, 89, 459, 715
TauI	GCSGC	2 cut(s)	322, 797
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	47, 1259
Tru9I	TTAA	2 cut(s)	47, 1259
TscAI	CASTG	4 cut(s)	693, 732, 946, 1044
TseFI	GTSAC	3 cut(s)	323, 501, 885
TseI	GCWGC	8 cut(s)	536, 590, 710, 782, 791, 830, 845, 848
Tsp45I	GTSAC	3 cut(s)	323, 501, 885
TspGWI	ACGGA	2 cut(s)	471, 628
TspRI	CASTG	4 cut(s)	693, 732, 946, 1044
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	166, 205
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	3 cut(s)	54, 89, 715
ZraI	GACGTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.