pycom09g01020

allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
819608 .. 820298
691 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGCCTGCTCAAGCTCTTCAAGACCCACAAAAGTTCAAGAACTCAACGTGTACGAGATCAACGAGCGAGATCGTTCAAGCCCTGCGTATCTCAGTTTAAGCCAGAAACCTGTGCATGCCCTCGGAGACCTTATTTACACCGGAGATCTTCAGAAACGATTGGGGATAACGGCGGGAATCTGCATTTTGATCGAAAACAAGCCGGAGAAGAAAGGATCGATCGATACGAGGCAATTTACAGCTTCTATTTCGGGAACTACGGCCACGTGGCGGTTCAGGGGCCGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

97

Amino Acids

10.63

Weight (kDa)

9.56

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 8 - 73 5.6e-24 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 173, 271
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 134
AcvI CACGTG 1 cut(s) 267
AfaI GTAC 2 cut(s) 53, 286
AfiI CCNNNNNNNGG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 3 cut(s) 21, 38, 78
AluBI AGCT 2 cut(s) 15, 242
AluI AGCT 2 cut(s) 15, 242
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 223
AoxI GGCC 3 cut(s) 3, 261, 280
AspS9I GGNCC 1 cut(s) 280
BbrPI CACGTG 1 cut(s) 267
BceAI ACGGC 3 cut(s) 186, 267, 276
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BcoDI GTCTC 1 cut(s) 120
BglII AGATCT 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 281
Bsa29I ATCGAT 2 cut(s) 218, 222
BsaAI YACGTR 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseCI ATCGAT 2 cut(s) 218, 222
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 5, 263, 282
BshVI ATCGAT 2 cut(s) 218, 222
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 2 cut(s) 141, 203
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 3 cut(s) 5, 263, 282
Bso31I GGTCTC 1 cut(s) 120
Bsp143I GATC 6 cut(s) 57, 70, 145, 189, 215, 219
BspACI CCGC 2 cut(s) 173, 271
BspANI GGCC 3 cut(s) 5, 263, 282
BspCNI CTCAG 1 cut(s) 105
BspDI ATCGAT 2 cut(s) 218, 222
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 6 cut(s) 57, 70, 145, 189, 215, 219
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 7, 117
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 6 cut(s) 60, 73, 148, 192, 218, 222
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 6 cut(s) 57, 70, 145, 189, 215, 219
BstMCI CGRYCG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
Bsu15I ATCGAT 2 cut(s) 218, 222
BsuRI GGCC 3 cut(s) 5, 263, 282
BsuTUI ATCGAT 2 cut(s) 218, 222
Cac8I GCNNGC 2 cut(s) 7, 117
Cfr13I GGNCC 1 cut(s) 280
ClaI ATCGAT 2 cut(s) 218, 222
Csp6I GTAC 2 cut(s) 52, 285
CviAII CATG 1 cut(s) 116
CviJI RGCY 8 cut(s) 5, 15, 81, 102, 202, 242, 263, 282
CviKI_1 RGCY 8 cut(s) 5, 15, 81, 102, 202, 242, 263, 282
CviQI GTAC 2 cut(s) 52, 285
DdeI CTNAG 1 cut(s) 92
DpnI GATC 6 cut(s) 59, 72, 147, 191, 217, 221
DpnII GATC 6 cut(s) 57, 70, 145, 189, 215, 219
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 267
FaeI CATG 1 cut(s) 119
FaiI YATR 1 cut(s) 117
FatI CATG 1 cut(s) 115
FauI CCCGC 1 cut(s) 166
HaeIII GGCC 3 cut(s) 5, 263, 282
HapII CCGG 2 cut(s) 141, 203
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 177
HpaII CCGG 2 cut(s) 141, 203
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 125, 153
Hpy188III TCNNGA 3 cut(s) 21, 38, 252
Hpy8I GTNNAC 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 48, 266
HpyCH4V TGCA 2 cut(s) 115, 183
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 2 cut(s) 48, 266
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 6 cut(s) 57, 70, 145, 189, 215, 219
LguI GCTCTTC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 19, 96, 116, 123, 154, 216, 262
MaeII ACGT 2 cut(s) 48, 266
MalI GATC 6 cut(s) 59, 72, 147, 191, 217, 221
MboI GATC 6 cut(s) 57, 70, 145, 189, 215, 219
MboII GAAGA 3 cut(s) 9, 140, 220
MflI RGATCY 1 cut(s) 145
MluCI AATT 1 cut(s) 233
MnlI CCTC 2 cut(s) 131, 222
MseI TTAA 1 cut(s) 98
MspI CCGG 2 cut(s) 141, 203
NdeII GATC 6 cut(s) 57, 70, 145, 189, 215, 219
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 281
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 224
PfeI GAWTC 1 cut(s) 177
Ple19I CGATCG 1 cut(s) 222
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 267
PspCI CACGTG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 280
PsuI RGATCY 1 cut(s) 145
PvuI CGATCG 1 cut(s) 222
RsaI GTAC 2 cut(s) 53, 286
RsaNI GTAC 2 cut(s) 52, 285
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 6 cut(s) 57, 70, 145, 189, 215, 219
Sau96I GGNCC 1 cut(s) 280
SetI ASST 6 cut(s) 17, 51, 112, 132, 244, 269
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 119
Sse9I AATT 1 cut(s) 233
SsiI CCGC 2 cut(s) 173, 271
TaiI ACGT 2 cut(s) 51, 269
TaqI TCGA 3 cut(s) 192, 218, 222
TasI AATT 1 cut(s) 233
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
XceI RCATGY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.