pycom09g01600

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
1264530 .. 1265133
604 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGAGGCAAAGTGGGATTGAAAAATCTGTAAGCAACCAACCCAAAAAAAAAATAATAAGAAGAAAAATGCACTACTACAAATGTAAAAAGGTCCCACCGAGATTTGAACTCGGGTTACTGGATTCAGAGTCCAATGTCCTAACCACTAGACCATGGGACCGTTGCCACTTCACCATTCACCGTTTCAGGCTTTCAGCTCCACTCGCTAAGCACACAGGCGAACAGAACACCGAAAACCATGACGAGAAGAACCCTGCTGAGACCTCCCTTTTCTCTCTCAGCAGCCCGTATTCTTCCTGCAAGACCTCCCCGTCCGTACAAAAATGGCGGGTCTTCATCAGAAGCTTCGAATTCTTAGTCGGCGTCAAGTTTCAGCTCAAATCCCAGGTGGGTTTTCACCAACTCTCTCCCTCCTCCCGAATGGGTAGAACCTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

147

Amino Acids

17.02

Weight (kDa)

10.26

Isoelectric Point (pI)

63.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AciI CCGC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 1 cut(s) 318
AgsI TTSAA 3 cut(s) 20, 107, 437
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 3 cut(s) 197, 345, 376
AluI AGCT 3 cut(s) 197, 345, 376
Alw26I GTCTC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AspS9I GGNCC 2 cut(s) 91, 157
AsuHPI GGTGA 3 cut(s) 163, 170, 389
AsuII TTCGAA 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 91, 157
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 283
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 2 cut(s) 91, 157
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 91, 157
BmiI GGNNCC 2 cut(s) 93, 158
BmrFI CCNGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 325
Bpu1102I GCTNAGC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 152, 384
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 152, 384
BseMII CTCAG 2 cut(s) 249, 292
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 403
BseXI GCAGC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 110
BslFI GGGAC 2 cut(s) 77, 170
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 77, 170
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 348
Bsp1720I GCTNAGC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 250, 291
BspLI GGNNCC 2 cut(s) 93, 158
BspT104I TTCGAA 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 152, 384
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 161, 182
BstACI GRCGYC 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 348
BstDEI CTNAG 4 cut(s) 207, 258, 278, 355
BstDSI CCRYGG 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 91, 157
CseI GACGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 317
CviAII CATG 2 cut(s) 153, 239
CviJI RGCY 5 cut(s) 190, 197, 285, 345, 376
CviKI_1 RGCY 5 cut(s) 190, 197, 285, 345, 376
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 4 cut(s) 207, 258, 278, 355
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 2 cut(s) 91, 157
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 2 cut(s) 156, 242
FaiI YATR 2 cut(s) 154, 240
FaqI GGGAC 2 cut(s) 77, 170
FatI CATG 2 cut(s) 152, 238
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 283
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 2 cut(s) 156, 242
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 2 cut(s) 122, 128
HphI GGTGA 3 cut(s) 163, 170, 389
Hpy188I TCNGA 2 cut(s) 127, 341
Hpy188III TCNNGA 1 cut(s) 417
HpyCH4III ACNGT 2 cut(s) 161, 182
HpyCH4V TGCA 2 cut(s) 70, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 4 cut(s) 207, 258, 278, 355
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 2 cut(s) 156, 242
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 104, 172, 201, 267, 310, 371, 398
Lsp1109I GCAGC 1 cut(s) 294
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 114
MboII GAAGA 4 cut(s) 72, 259, 285, 325
MluCI AATT 1 cut(s) 350
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 4 cut(s) 274, 316, 421, 424
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 152
NlaIII CATG 2 cut(s) 156, 242
NlaIV GGNNCC 2 cut(s) 93, 158
NspV TTCGAA 1 cut(s) 348
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 93, 158
PspPI GGNCC 2 cut(s) 91, 157
PspPPI RGGWCCY 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SatI GCNGC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 91, 157
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 386
SetI ASST 8 cut(s) 93, 199, 266, 308, 347, 378, 390, 434
SfuI TTCGAA 1 cut(s) 348
SinI GGWCC 2 cut(s) 91, 157
Sse9I AATT 1 cut(s) 350
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 161, 182
TaqI TCGA 1 cut(s) 348
TasI AATT 1 cut(s) 350
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 91, 157
XapI RAATTY 1 cut(s) 350
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.