pycom09g01620

Pentatricopeptide repeat-containing protein At1g03560

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
1266291 .. 1266724
434 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGGTGGTGAAGGGATGTTCACATGATTCATATTGCTATAATGCCCTTATCGACGCCCTAGCTAAATGTGGAAAAACTGATGAAGCATTGGCACTCTTTAAGAAAATGGAAGAGGAAGGTTGGCACAGAAATGAAGAGGCATTGAAGCTCTGGCACACGATGATTGATAAGAGCATCACACCGAATGTTGCTTCCTTCAGGGCCCTCTCTATTTGGGTTTGTCTCTCAGGCAAGGTAGCCAGAGCCTGCAAGATTTTGGATGAGCTAGCGCCAATGGGTGTAATTCCTGAGACAGCTTTTGAAGATATCGATCAATGTGTTATCCAAAGCTGGTCGTGTCAAGGAAGCTTGCAACTTGACCGATGGAATTGTGGACACAGGTAG

Protein Analysis

128

Amino Acids

14.29

Weight (kDa)

5.76

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 4 - 37 5e-10 PPR repeat
PPR_2 PF13041 9 - 44 1.7e-08 PPR repeat family
PPR PF01535 12 - 40 4.5e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 54
AgsI TTSAA 2 cut(s) 145, 302
AluBI AGCT 6 cut(s) 62, 148, 265, 296, 330, 348
AluI AGCT 6 cut(s) 62, 148, 265, 296, 330, 348
Alw26I GTCTC 2 cut(s) 227, 284
AlwNI CAGNNNCTG 1 cut(s) 246
AoxI GGCC 1 cut(s) 201
ApaI GGGCCC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 201, 202
AsuHPI GGTGA 1 cut(s) 19
AsuNHI GCTAGC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 205
BccI CCATC 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 227, 284
BfaI CTAG 2 cut(s) 59, 266
BfoI RGCGCY 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 201, 202
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 1 cut(s) 183
BmtI GCTAGC 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 2 cut(s) 20, 265
BseJI GATNNNNATC 1 cut(s) 309
BseMII CTCAG 2 cut(s) 240, 279
BseSI GKGCMC 1 cut(s) 205
BshFI GGCC 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 227, 284
BsnI GGCC 1 cut(s) 203
Bsp120I GGGCCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 239, 280
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 203
BspOI GCTAGC 1 cut(s) 269
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 105, 129
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 247, 267, 350
BstDEI CTNAG 2 cut(s) 226, 288
BstF5I GGATG 2 cut(s) 20, 265
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 227, 284
BstMBI GATC 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 1 cut(s) 203
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 2 cut(s) 20, 265
Cac8I GCNNGC 3 cut(s) 247, 267, 350
CaiI CAGNNNCTG 1 cut(s) 246
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 201, 202
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 62
CviAII CATG 1 cut(s) 23
CviJI RGCY 9 cut(s) 62, 148, 203, 239, 245, 265, 296, 330, 348
CviKI_1 RGCY 9 cut(s) 62, 148, 203, 239, 245, 265, 296, 330, 348
DdeI CTNAG 2 cut(s) 226, 288
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 105, 129
EarI CTCTTC 2 cut(s) 105, 129
Eco24I GRGCYC 1 cut(s) 205
Eco32I GATATC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 201, 202
EcoRV GATATC 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 1 cut(s) 26
FaiI YATR 3 cut(s) 24, 31, 39
FatI CATG 1 cut(s) 22
FokI GGATG 2 cut(s) 27, 272
FriOI GRGCYC 1 cut(s) 205
FspBI CTAG 2 cut(s) 59, 266
GlaI GCGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 203
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 20, 374
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 20, 374
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 4, 110, 205
HpyCH4V TGCA 2 cut(s) 249, 352
HpyF3I CTNAG 2 cut(s) 226, 288
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 8 cut(s) 136, 184, 213, 253, 259, 300, 316, 364
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 59, 266
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 122, 146, 314
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 282, 367
MnlI CCTC 3 cut(s) 106, 130, 215
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 129
NdeII GATC 1 cut(s) 310
NheI GCTAGC 1 cut(s) 265
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 203
PspOMI GGGCCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 201, 202
PstNI CAGNNNCTG 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 2 cut(s) 201, 202
SduI GDGCHC 1 cut(s) 205
SetI ASST 9 cut(s) 64, 121, 150, 237, 267, 298, 332, 350, 383
SfaNI GCATC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 2 cut(s) 282, 367
SspMI CTAG 2 cut(s) 59, 266
TaqI TCGA 2 cut(s) 51, 309
TaqII GACCGA 1 cut(s) 375
TasI AATT 2 cut(s) 282, 367
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 18, 96, 147
XspI CTAG 2 cut(s) 59, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.