pycom09g01630

Pentatricopeptide repeat-containing protein At1g03560

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
1266795 .. 1267207
413 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGAAGTTGATGCATAGTAAGATAGGTATTGGGTATGACCGAATGGGTAGCCTCAAAAGGCGAGTGGAGTTCCGAATTCTCTTTTACAGTTTAAGTCTTAATAAATCTATTTCGCTTACCATCAAAAGATGTAGAATTGATGTTCATTCTCCAATCCTCGTATATTATACCATTCAATTTATTGCAGATTATTTTATTCAATTTTTTGTCAACTTAAATCACTTGACACACTTTAGAGTTGTGAATCTAACGTCTAATTTACCCTCCGAAGTTAATTAA

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

10.0

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 75
AgsI TTSAA 2 cut(s) 176, 200
ApoI RAATTY 1 cut(s) 75
BccI CCATC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 89
CviJI RGCY 1 cut(s) 51
CviKI_1 RGCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 15
FaiI YATR 4 cut(s) 15, 36, 163, 168
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 74, 268
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 13, 185
HpySE526I ACGT 1 cut(s) 251
MaeII ACGT 1 cut(s) 251
MluCI AATT 6 cut(s) 75, 135, 176, 200, 256, 274
MnlI CCTC 3 cut(s) 62, 167, 274
Mph1103I ATGCAT 1 cut(s) 15
MseI TTAA 5 cut(s) 92, 99, 215, 273, 277
NsiI ATGCAT 1 cut(s) 15
PacI TTAATTAA 1 cut(s) 277
PfeI GAWTC 1 cut(s) 244
SaqAI TTAA 5 cut(s) 92, 99, 215, 273, 277
SetI ASST 2 cut(s) 28, 254
SgeI CNNG 3 cut(s) 74, 170, 235
Sse9I AATT 6 cut(s) 75, 135, 176, 200, 256, 274
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 254
TaqII GACCGA 1 cut(s) 54
TasI AATT 6 cut(s) 75, 135, 176, 200, 256, 274
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 5 cut(s) 92, 99, 215, 273, 277
Tru9I TTAA 5 cut(s) 92, 99, 215, 273, 277
TspDTI ATGAA 2 cut(s) 17, 134
XapI RAATTY 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.