pycom09g02040

External alternative NAD(P)H-ubiquinone oxidoreductase B1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
1487783 .. 1488318
536 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGAAGAAAATTTTCAATCTGATCGTTACACTTGAGGAAGCAGTCTCTTCTCACTGGATCGGCCTCTCAATTCTGGTCAACTTTTCCCTAATGACGATCTTGTTCTTCTTCCCCAGAGCTTCAAGAGCTTTCAATGGCCACCCTGTAGCCTCCAAGCTTCTGGTGCTCTGTACTATCAGGTTCTCAATTTTCTTGCTTACCGTGTTATTTTCTTTTCGATCTGTTTGGCTTCTGAGAAAATGCATGATCAGAAAATAA

Protein Analysis

86

Amino Acids

9.88

Weight (kDa)

11.4

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 3 cut(s) 16, 123, 133
AluBI AGCT 3 cut(s) 119, 128, 157
AluI AGCT 3 cut(s) 119, 128, 157
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 65
AoxI GGCC 2 cut(s) 61, 136
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 168
BclI TGATCA 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 59
BshFI GGCC 2 cut(s) 63, 138
BsiHKAI GWGCWC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 63, 138
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 5 cut(s) 21, 57, 96, 218, 246
BspANI GGCC 2 cut(s) 63, 138
BspCNI CTCAG 1 cut(s) 225
BspPI GGATC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 59
BssMI GATC 5 cut(s) 21, 57, 96, 218, 246
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 233
BstKTI GATC 5 cut(s) 24, 60, 99, 221, 249
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 5 cut(s) 21, 57, 96, 218, 246
BstMWI GCNNNNNNNGC 2 cut(s) 125, 163
BstSFI CTRYAG 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuRI GGCC 2 cut(s) 63, 138
BtsIMutI CAGTG 1 cut(s) 52
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 244
CviJI RGCY 7 cut(s) 63, 119, 128, 138, 149, 157, 229
CviKI_1 RGCY 7 cut(s) 63, 119, 128, 138, 149, 157, 229
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 233
DpnI GATC 5 cut(s) 23, 59, 98, 220, 248
DpnII GATC 5 cut(s) 21, 57, 96, 218, 246
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 245
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FatI CATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 246
HaeIII GGCC 2 cut(s) 63, 138
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 21, 234, 251
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 163
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 5 cut(s) 21, 57, 96, 218, 246
LpnPI CCDG 6 cut(s) 40, 59, 127, 146, 156, 163
MaeIII GTNAC 1 cut(s) 25
MalI GATC 5 cut(s) 23, 59, 98, 220, 248
MboI GATC 5 cut(s) 21, 57, 96, 218, 246
MboII GAAGA 4 cut(s) 16, 39, 97, 100
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 3 cut(s) 9, 69, 186
MluNI TGGCCA 1 cut(s) 138
MnlI CCTC 3 cut(s) 28, 74, 160
Mox20I TGGCCA 1 cut(s) 138
Mph1103I ATGCAT 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 11
MscI TGGCCA 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 125, 163
NdeII GATC 5 cut(s) 21, 57, 96, 218, 246
NlaIII CATG 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 11
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
Sau3AI GATC 5 cut(s) 21, 57, 96, 218, 246
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 121, 130, 159, 182
SfcI CTRYAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 9, 69, 186
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 9, 69, 186
TatI WGTACW 1 cut(s) 170
TscAI CASTG 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 59
XapI RAATTY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.