Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2133435 .. 2134214

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGACATCAGTTGAATTTTGGTGGTTACGTATTGGTGACAAATGCAGTGGACCATGTACAATCAGGGAATGTTGCCCTACAAACTGCAAAGAGCTTGCAGAAGAAGTCAAGAAAATGCATGATGATTTCCATAATCTTGCTCTTGATTATTGCATCGATCATCGTACTCTCTATTCTCAAGCCATGGAAGAAGTAATCAGCAGTGCAAAGGTTGACAATCTTATCTTCCATCACATGTATATCACTCTATCATTAATCTTAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

5.38

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	14, 262
AfaI	GTAC	2 cut(s)	58, 166
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	14, 262
AseI	ATTAAT	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	50
BccI	CCATC	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmsI	GCATC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	238
BstSNI	TACGTA	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	183
BtsI	GCAGTG	2 cut(s)	52, 208
BtsIMutI	CAGTG	2 cut(s)	52, 208
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	57, 165
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	4 cut(s)	54, 119, 184, 235
CviJI	RGCY	2 cut(s)	94, 182
CviKI_1	RGCY	2 cut(s)	94, 182
CviQI	GTAC	2 cut(s)	57, 165
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	57, 122, 187, 238
FaiI	YATR	6 cut(s)	55, 120, 132, 185, 236, 240
FatI	CATG	4 cut(s)	53, 118, 183, 234
Hin1II	CATG	4 cut(s)	57, 122, 187, 238
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	50, 214
Hpy188III	TCNNGA	2 cut(s)	109, 143
Hpy8I	GTNNAC	2 cut(s)	50, 214
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	45, 87, 98, 118, 153, 206
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	4 cut(s)	57, 122, 187, 238
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	1 cut(s)	49
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	24, 35
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	113, 200, 217
MluCI	AATT	2 cut(s)	14, 262
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	3 cut(s)	254, 260, 268
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	4 cut(s)	57, 122, 187, 238
NmuCI	GTSAC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	238
PciI	ACATGT	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	29
PscI	ACATGT	1 cut(s)	234
PshBI	ATTAAT	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	58, 166
RsaNI	GTAC	2 cut(s)	57, 165
SaqAI	TTAA	3 cut(s)	254, 260, 268
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	50
SetI	ASST	3 cut(s)	31, 96, 213
SfaNI	GCATC	1 cut(s)	162
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SnaBI	TACGTA	1 cut(s)	29
Sse9I	AATT	2 cut(s)	14, 262
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	14, 262
TatI	WGTACW	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	254, 260, 268
Tru9I	TTAA	3 cut(s)	254, 260, 268
TscAI	CASTG	2 cut(s)	52, 208
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	2 cut(s)	52, 208
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	2 cut(s)	14, 262
XceI	RCATGY	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.