Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2375606 .. 2376669

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGATTTTTATAGCATACCTGGTGCCTGCTGATCTGACTATTGGCCAGTTCGTGTACGTTGTCCGGAAAAGAATCAAGCTCAGTCCTGAGAAGGCTATTTTCGTTTTTGTTAGGAATATTTTGCCACCAACAGCGGCTATAATGTCTGCAATTTATGAGGAAAATAAGGATGAAGATGGCTTTCTTTACATGCTGTACAGCGGTGAGAACACATTCGGGACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

76

Amino Acids

8.59

Weight (kDa)

5.18

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	6 - 73	9.5e-32	Autophagy protein Atg8 ubiquitin like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	2 cut(s)	134, 201
AcoI	YGGCCR	1 cut(s)	43
AfaI	GTAC	2 cut(s)	56, 197
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	22
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	78, 94
BseNI	ACTGG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	134, 201
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	79, 93
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	80, 87
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	27
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	55, 196
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	45, 79, 95, 137, 180
CviKI_1	RGCY	5 cut(s)	45, 79, 95, 137, 180
CviQI	GTAC	2 cut(s)	55, 196
DdeI	CTNAG	2 cut(s)	80, 87
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	193
FaiI	YATR	5 cut(s)	11, 16, 140, 156, 191
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	36, 227
Hpy188III	TCNNGA	3 cut(s)	64, 86, 217
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	80, 87
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	5, 32, 39, 59, 77, 99
MabI	ACCWGGT	1 cut(s)	18
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	45
MnlI	CCTC	1 cut(s)	151
Mox20I	TGGCCA	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	134, 201
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	56, 197
RsaNI	GTAC	2 cut(s)	55, 196
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	3 cut(s)	21, 60, 81
SexAI	ACCWGGT	1 cut(s)	18
SgeI	CNNG	9 cut(s)	31, 32, 38, 58, 64, 76, 88, 98, 202
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	134, 201
SspI	AATATT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	18
TaiI	ACGT	1 cut(s)	60
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	186
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.