pycom09g04340

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
3150659 .. 3151363
705 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGAGTCGAACCAATCGAAACCTGACCTACTGTGCAATCTTGAAAGCTCTCAGAGAACCATGTACCCATATGTAACTGGTACATCTGTTCTGAGTGTCGAACGAATGAAACTTATTGGAAAACATTCTCTTATTGGTGCAAGTGGAGAAGTAAGTAACTTTCAGGAGCTATTACGTTATCTGGATGATCTCGTCTTGTACGACAACATGTGGGATGATGGGACCTCTTTGGGACCCAAACAGGTTCAATCCATTGTGGAACTCTCTTGTTCAATCCATTTGAACCGTGTGATGTACACTAGGCGTAACAAGTTCAATCCATTGTGGAACTCTCTTGTTCTTGGTGGAGTTAAAAACGGACAGAAGTACCTTGGCCTGGTTAGCATGATTGGTGTAAATTTTGAGGACAATCATGTAGCTACAGGATTTGGAAATCACCTTGCACGGCCTATTCTTCGTGATGAGTGGAATGAGAACTTGACTTTCGAAGAGGGTGTAAAGCTGCTAGAGAAATGCATGCGTGTTCTTCTCTATCGAGATCAATCTGCTATCAACAACCTTCAGATAGCAAAAATCACTGAAGAAGGTTTTCTCTGCTTTCGAAAATCCGACATTGGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

208

Amino Acids

23.5

Weight (kDa)

6.1

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 32 - 192 1.1e-19 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 545, 600
AfaI GTAC 5 cut(s) 65, 82, 200, 296, 368
AfiI CCNNNNNNNGG 2 cut(s) 376, 615
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 5 cut(s) 44, 248, 273, 283, 316
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 4 cut(s) 48, 169, 419, 502
AluI AGCT 4 cut(s) 48, 169, 419, 502
AoxI GGCC 2 cut(s) 373, 446
ApeKI GCWGC 1 cut(s) 502
ApoI RAATTY 1 cut(s) 397
Asp700I GAANNNNTTC 2 cut(s) 124, 588
AspS9I GGNCC 2 cut(s) 222, 233
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 2 cut(s) 486, 601
AvaII GGWCC 2 cut(s) 222, 233
BaeI ACNNNNGTAYC 4 cut(s) 72, 105, 350, 383
BbvI GCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 377
BfaI CTAG 2 cut(s) 300, 506
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 1 cut(s) 503
BlsI GCNGC 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 2 cut(s) 222, 233
BmgT120I GGNCC 2 cut(s) 222, 233
BmiI GGNNCC 3 cut(s) 223, 234, 235
BmrFI CCNGG 1 cut(s) 377
Bpu14I TTCGAA 2 cut(s) 486, 601
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 615
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 190, 220
BseLI CCNNNNNNNGG 2 cut(s) 376, 615
BseMII CTCAG 2 cut(s) 65, 83
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 489
BshFI GGCC 2 cut(s) 375, 448
BslFI GGGAC 2 cut(s) 235, 246
BslI CCNNNNNNNGG 2 cut(s) 376, 615
BsmFI GGGAC 2 cut(s) 235, 246
BsnI GGCC 2 cut(s) 375, 448
Bsp119I TTCGAA 2 cut(s) 486, 601
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 187, 538
BspANI GGCC 2 cut(s) 375, 448
BspCNI CTCAG 2 cut(s) 64, 84
BspLI GGNNCC 3 cut(s) 223, 234, 235
BspT104I TTCGAA 2 cut(s) 486, 601
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 187, 538
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 33, 287
Bst6I CTCTTC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 294
BstBI TTCGAA 2 cut(s) 486, 601
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 51, 92
BstF5I GGATG 2 cut(s) 190, 220
BstKTI GATC 2 cut(s) 190, 541
BstMBI GATC 2 cut(s) 187, 538
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 211, 520
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 375, 448
BtsCI GGATG 2 cut(s) 190, 220
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 222, 233
Csp6I GTAC 5 cut(s) 64, 81, 199, 295, 367
CviAII CATG 5 cut(s) 61, 208, 385, 413, 517
CviJI RGCY 6 cut(s) 48, 169, 375, 419, 448, 502
CviKI_1 RGCY 6 cut(s) 48, 169, 375, 419, 448, 502
CviQI GTAC 5 cut(s) 64, 81, 199, 295, 367
DdeI CTNAG 2 cut(s) 51, 92
DpnI GATC 2 cut(s) 189, 540
DpnII GATC 2 cut(s) 187, 538
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 222, 233
Eco57I CTGAAG 2 cut(s) 545, 600
EcoO109I RGGNCCY 2 cut(s) 222, 233
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 370
EcoT22I ATGCAT 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 5 cut(s) 64, 211, 388, 416, 520
FaiI YATR 7 cut(s) 62, 70, 72, 209, 386, 414, 518
FaqI GGGAC 2 cut(s) 235, 246
FatI CATG 5 cut(s) 60, 207, 384, 412, 516
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 503
FokI GGATG 2 cut(s) 197, 227
Fsp4HI GCNGC 1 cut(s) 503
FspBI CTAG 2 cut(s) 300, 506
GluI GCNGC 1 cut(s) 503
HaeIII GGCC 2 cut(s) 375, 448
Hin1II CATG 5 cut(s) 64, 211, 388, 416, 520
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 4 cut(s) 54, 93, 564, 610
Hpy188III TCNNGA 5 cut(s) 41, 164, 182, 458, 536
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 2 cut(s) 569, 578
HpyCH4III ACNGT 2 cut(s) 33, 287
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 36, 140, 443, 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 2 cut(s) 51, 92
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 5 cut(s) 64, 211, 388, 416, 520
KflI GGGWCCC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 187, 538
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 8 cut(s) 36, 63, 149, 167, 227, 362, 389, 408
Lsp1109I GCAGC 1 cut(s) 489
MaeI CTAG 2 cut(s) 300, 506
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 3 cut(s) 73, 155, 305
MalI GATC 2 cut(s) 189, 540
MboI GATC 2 cut(s) 187, 538
MboII GAAGA 4 cut(s) 446, 500, 518, 593
MluCI AATT 1 cut(s) 397
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 235, 397, 484
Mph1103I ATGCAT 1 cut(s) 518
MroXI GAANNNNTTC 2 cut(s) 124, 588
MseI TTAA 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 381
NdeI CATATG 1 cut(s) 70
NdeII GATC 2 cut(s) 187, 538
NlaIII CATG 5 cut(s) 64, 211, 388, 416, 520
NlaIV GGNNCC 3 cut(s) 223, 234, 235
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 2 cut(s) 211, 520
NspV TTCGAA 2 cut(s) 486, 601
PaeI GCATGC 1 cut(s) 520
PciI ACATGT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 198
PdmI GAANNNNTTC 2 cut(s) 124, 588
PkrI GCNGC 1 cut(s) 504
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 2 cut(s) 222, 233
PscI ACATGT 1 cut(s) 207
Psp5II RGGWCCY 2 cut(s) 222, 233
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 223, 234, 235
PspPI GGNCC 2 cut(s) 222, 233
PspPPI RGGWCCY 2 cut(s) 222, 233
RsaI GTAC 5 cut(s) 65, 82, 200, 296, 368
RsaNI GTAC 5 cut(s) 64, 81, 199, 295, 367
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 503
Sau3AI GATC 2 cut(s) 187, 538
Sau96I GGNCC 2 cut(s) 222, 233
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 377
SfcI CTRYAG 1 cut(s) 420
SfuI TTCGAA 2 cut(s) 486, 601
SinI GGWCC 2 cut(s) 222, 233
SphI GCATGC 1 cut(s) 520
Sse9I AATT 1 cut(s) 397
SspMI CTAG 2 cut(s) 300, 506
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 33, 287
TaiI ACGT 1 cut(s) 178
TaqI TCGA 6 cut(s) 8, 17, 99, 486, 535, 601
TasI AATT 1 cut(s) 397
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 583
TseI GCWGC 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 222, 233
XapI RAATTY 1 cut(s) 397
XceI RCATGY 2 cut(s) 211, 520
XmnI GAANNNNTTC 2 cut(s) 124, 588
XspI CTAG 2 cut(s) 300, 506
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.