Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3157569 .. 3158356

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGCAAGCCTGTTGGTCAGTCTCTAAAGAAATCAGCTCTCCTCACTCAGGTTTGGAAGGATGACTTGAATTCTGGGCATCTCTTGGTTTCATTGTTTGAGTTGTTCGGTGAAAACATCCTCTCCTTCGTTCCAACTCCCGAGATGTCTTTATTTTTCTGCTTAAACTTTGGTACCGGAGTACTCCTTTTCCACTGCTTTCTTCAGGAAGCTATCTTCTTCCAGCAGCATTTGAACTGGCAAGAACCCCATCCCATTGGCCATAGCAAGCATCATCCGCTTGGTTTCAGCCTTGAACTCCTCCAAATCAACCGCCCCGTTCGAGTCATCGATCAAACTGCACGAACAGCGAGTCGTAGACATAAGCAATCTCTTCGGGGTCTAGCTTCACATCAATGCCATAGTGGGTCTCAAAGACCCTCAGAGACCGAAACTCCTTCAGCATCTCTGCATAAGAAAGCAGACCATCATGGTTGGTGTCGAGATGAGCAAAACGGTCGCGAATTGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

172

Amino Acids

19.41

Weight (kDa)

8.8

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	501
AciI	CCGC	2 cut(s)	278, 313
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	2 cut(s)	188, 423
AfaI	GTAC	2 cut(s)	175, 183
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	3 cut(s)	70, 235, 296
AluBI	AGCT	3 cut(s)	38, 212, 386
AluI	AGCT	3 cut(s)	38, 212, 386
Alw26I	GTCTC	3 cut(s)	27, 414, 419
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
Asp718I	GGTACC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	140
BaeI	ACNNNNGTAYC	4 cut(s)	157, 165, 190, 198
BalI	TGGCCA	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	258, 474
BcgI	CGANNNNNNTGC	6 cut(s)	320, 354, 356, 390, 479, 513
BcoDI	GTCTC	3 cut(s)	27, 414, 419
BfaI	CTAG	1 cut(s)	383
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
BmcAI	AGTACT	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	3 cut(s)	88, 280, 452
Bsa29I	ATCGAT	1 cut(s)	330
BsaI	GGTCTC	2 cut(s)	414, 419
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	330
BseGI	GGATG	4 cut(s)	67, 117, 250, 274
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	62, 435
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	32, 290
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	3 cut(s)	27, 414, 419
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	2 cut(s)	414, 419
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	331
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	2 cut(s)	278, 313
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	61, 434
BspDI	ATCGAT	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	2 cut(s)	414, 419
BsrI	ACTGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	8, 269
BstDEI	CTNAG	2 cut(s)	48, 421
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	67, 117, 250, 274
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	27, 414, 419
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 347
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	67, 117, 250, 274
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
BtuMI	TCGCGA	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	8, 269
ClaI	ATCGAT	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	174, 182
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	7 cut(s)	10, 38, 212, 261, 291, 386, 513
CviKI_1	RGCY	7 cut(s)	10, 38, 212, 261, 291, 386, 513
CviQI	GTAC	2 cut(s)	174, 182
DdeI	CTNAG	2 cut(s)	48, 421
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco31I	GGTCTC	2 cut(s)	414, 419
Eco57I	CTGAAG	2 cut(s)	188, 423
Eco88I	CYCGRG	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	473
FaiI	YATR	5 cut(s)	264, 363, 402, 453, 471
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	4 cut(s)	74, 104, 237, 261
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	1 cut(s)	473
HinfI	GANTC	2 cut(s)	324, 352
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	140, 206, 482, 500
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	52, 136, 447
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	2 cut(s)	341, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 347
HpyF3I	CTNAG	2 cut(s)	48, 421
Hsp92II	CATG	1 cut(s)	473
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	7 cut(s)	24, 35, 60, 190, 191, 223, 236
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	3 cut(s)	88, 280, 452
MaeI	CTAG	1 cut(s)	383
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	194, 208, 211, 365
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	2 cut(s)	70, 503
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	333, 361
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	53, 131, 311, 430, 503
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	394
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	277, 347
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	473
NlaIV	GGNNCC	1 cut(s)	175
NruI	TCGCGA	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	2 cut(s)	332, 360
PpsI	GAGTC	2 cut(s)	332, 360
PspN4I	GGNNCC	1 cut(s)	175
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	2 cut(s)	175, 183
RsaNI	GTAC	2 cut(s)	174, 182
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	183
SchI	GAGTC	2 cut(s)	333, 361
SetI	ASST	4 cut(s)	40, 54, 214, 388
SfaNI	GCATC	3 cut(s)	88, 280, 452
SmiMI	CAYNNNNRTG	1 cut(s)	394
Sse9I	AATT	2 cut(s)	70, 503
SsiI	CCGC	2 cut(s)	278, 313
SspMI	CTAG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	3 cut(s)	322, 330, 481
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	2 cut(s)	70, 503
TatI	WGTACW	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.