pycom09g05670

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Reverse (-)
4210832 .. 4212438
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGGGCGCCCTGTCGTATTTCTGGGCCACCCTCGGCGTGACTCCATGGCTCTTTGACTTGTTTGTGGTAGCTTTTATTGAAAGGCTCTTCAGACCCACTTACAAAATGTTGTGGGTTTGCAGGATATTTTGTTCTGGGGAAGAAGGTGTTGATAATGCAAAGTACAGCATCCCGAAATGGAAGACTGAAAATGCAAATTACAAACAGAGCAGAGAGACGAAGACGAAGAAGATTGGAGCGGAGTTTGTGGGGAGCTTCATCCTGATATTTTCGGCGGCAGCAGCACCTATTGTGAACCAAAAGTACCCTGATTCCGGGACGCTTCTAGCGTTTCGACACTTTCCGTGGTCACAAGTTCCCTTCTACATAGCAGCTCAGGTTTCAGCGTCCATTTCAGCAAGTTTTTTTGGATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

140

Amino Acids

15.69

Weight (kDa)

9.33

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 239
AciI CCGC 2 cut(s) 239, 275
AclWI GGATC 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 164, 305
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 115, 147
AluBI AGCT 3 cut(s) 71, 255, 374
AluI AGCT 3 cut(s) 71, 255, 374
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 418
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 278, 281, 371
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 316
BanI GGYRCC 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 188, 227
BbvI GCAGC 3 cut(s) 290, 293, 383
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 4 cut(s) 276, 279, 282, 372
BlsI GCNGC 4 cut(s) 277, 280, 283, 373
Bme1390I CCNGG 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 2 cut(s) 188, 227
Bpu10I CCTNAGC 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 31, 44, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseDI CCNNGG 3 cut(s) 31, 44, 344
BseGI GGATG 2 cut(s) 168, 258
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 290, 293, 383
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 410
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 2 cut(s) 239, 275
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 31, 44, 344
BssMI GATC 1 cut(s) 410
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 375, 417
BstDSI CCRYGG 2 cut(s) 44, 344
BstF5I GGATG 2 cut(s) 168, 258
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 290, 293, 383
BstV2I GAAGAC 2 cut(s) 188, 227
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 44, 344
BtsCI GGATG 2 cut(s) 168, 258
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 2 cut(s) 328, 375
Csp6I GTAC 2 cut(s) 163, 304
CviAII CATG 1 cut(s) 45
CviJI RGCY 6 cut(s) 26, 49, 71, 85, 255, 374
CviKI_1 RGCY 6 cut(s) 26, 49, 71, 85, 255, 374
CviQI GTAC 2 cut(s) 163, 304
DdeI CTNAG 2 cut(s) 375, 417
DinI GGCGCC 1 cut(s) 7
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 1 cut(s) 48
FaiI YATR 2 cut(s) 46, 368
FaqI GGGAC 1 cut(s) 331
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 4 cut(s) 276, 279, 282, 372
FokI GGATG 2 cut(s) 155, 245
Fsp4HI GCNGC 4 cut(s) 276, 279, 282, 372
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 7
GluI GCNGC 4 cut(s) 276, 279, 282, 372
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 315
HgaI GACGC 2 cut(s) 328, 375
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 2 cut(s) 40, 311
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 172, 262
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 137, 370
HpyCH4V TGCA 3 cut(s) 120, 158, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 375, 417
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 6
KasI GGCGCC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 410
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 236, 252
LpnPI CCDG 8 cut(s) 7, 23, 106, 120, 275, 321, 328, 362
Lsp1109I GCAGC 3 cut(s) 290, 293, 383
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 37, 348
MalI GATC 1 cut(s) 412
MbiI CCGCTC 1 cut(s) 239
MboI GATC 1 cut(s) 410
MboII GAAGA 6 cut(s) 79, 152, 193, 232, 238, 241
MflI RGATCY 1 cut(s) 410
MluCI AATT 1 cut(s) 196
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 1 cut(s) 41
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 281
NarI GGCGCC 1 cut(s) 6
NciI CCSGG 1 cut(s) 316
NcoI CCATGG 1 cut(s) 44
NdeII GATC 1 cut(s) 410
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 37, 348
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 4 cut(s) 277, 280, 283, 373
PleI GAGTC 1 cut(s) 34
PluTI GGCGCC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 24
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 164, 305
RsaNI GTAC 2 cut(s) 163, 304
SapI GCTCTTC 1 cut(s) 92
SatI GCNGC 4 cut(s) 276, 279, 282, 372
Sau3AI GATC 1 cut(s) 410
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 316
SetI ASST 6 cut(s) 73, 148, 257, 289, 376, 381
SfaNI GCATC 1 cut(s) 177
SfoI GGCGCC 1 cut(s) 7
Sse9I AATT 1 cut(s) 196
SsiI CCGC 2 cut(s) 239, 275
SspDI GGCGCC 1 cut(s) 5
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 44
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 196
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 311
TseFI GTSAC 2 cut(s) 37, 348
TseI GCWGC 3 cut(s) 278, 281, 371
Tsp45I GTSAC 2 cut(s) 37, 348
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 333
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.