Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4471489 .. 4472575

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGCAGCAAAACAAACAAGAAAAAGAATCCAACGAAGAAAAGAAAGGTGAACTCTGAGCCGGAGGTTATGGCTGTTGGGGCACAAGACAGCTTGCAACCAATGGAGAAATTGAACTCAAGAGCAGCAACACTTGATGGCTATTATGGTGCCCAACCGAATGTGCAAGGAATGGTACAATTGAATCTAATGGCACCTACGCGAGATAACTACTATGGGAATCAACAGACCATTCAGGGGCTTGGACAACTGAACTCTATAGCTCCAAGCCATGATGGTTATTACAGTGCGCAGCAAAGCATGCATGGGCTGGGACAGATGGATTTTTTCAGAACACCAACTGGTTACGTTTATGGAATTCGGGATGACCCCAACGTAAGAACCGCTCCATTGCATGAAGATGCATCCAGACATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

140

Amino Acids

15.39

Weight (kDa)

9.15

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
AccB1I	GGYRCC	2 cut(s)	149, 193
AccBSI	CCGCTC	1 cut(s)	386
AccII	CGCG	1 cut(s)	202
AciI	CCGC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	357
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	115, 184
AluBI	AGCT	2 cut(s)	93, 263
AluI	AGCT	2 cut(s)	93, 263
ApeKI	GCWGC	3 cut(s)	6, 125, 292
ApoI	RAATTY	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	61
BaeGI	GKGCMC	2 cut(s)	85, 154
BanI	GGYRCC	2 cut(s)	149, 193
BbvI	GCAGC	3 cut(s)	18, 137, 304
BccI	CCATC	3 cut(s)	131, 269, 313
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	7, 126, 293
BlsI	GCNGC	3 cut(s)	8, 127, 294
BmiI	GGNNCC	2 cut(s)	151, 195
BmsI	GCATC	2 cut(s)	391, 413
BpuEI	CTTGAG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	370, 404
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	2 cut(s)	85, 154
BseXI	GCAGC	3 cut(s)	18, 137, 304
BseYI	CCCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	149, 193
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	85, 154
BspACI	CCGC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	151, 195
BspT107I	GGYRCC	2 cut(s)	149, 193
BsrBI	CCGCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	95, 302
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	370, 404
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 301
BstNSI	RCATGY	2 cut(s)	304, 416
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	2 cut(s)	85, 154
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	18, 137, 304
BtsCI	GGATG	2 cut(s)	370, 404
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	95, 302
CfoI	GCGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	5 cut(s)	272, 301, 305, 395, 413
CviJI	RGCY	8 cut(s)	61, 74, 93, 141, 241, 263, 270, 310
CviKI_1	RGCY	8 cut(s)	61, 74, 93, 141, 241, 263, 270, 310
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	357
EcoT22I	ATGCAT	3 cut(s)	306, 406, 418
FaeI	CATG	5 cut(s)	275, 304, 308, 398, 416
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	5 cut(s)	271, 300, 304, 394, 412
Fnu4HI	GCNGC	3 cut(s)	7, 126, 293
FokI	GGATG	2 cut(s)	377, 391
Fsp4HI	GCNGC	3 cut(s)	7, 126, 293
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	3 cut(s)	7, 126, 293
GsaI	CCCAGC	1 cut(s)	314
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	5 cut(s)	275, 304, 308, 398, 416
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	3 cut(s)	28, 184, 220
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	58, 332
Hpy188III	TCNNGA	3 cut(s)	120, 362, 408
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	348, 375
HpyCH4V	TGCA	6 cut(s)	97, 166, 304, 394, 404, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 301
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	2 cut(s)	348, 375
Hsp92II	CATG	5 cut(s)	275, 304, 308, 398, 416
HspAI	GCGC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	268, 391
LpnPI	CCDG	4 cut(s)	75, 221, 296, 327
Lsp1109I	GCAGC	3 cut(s)	18, 137, 304
LweI	GCATC	2 cut(s)	391, 413
MaeII	ACGT	2 cut(s)	348, 375
MaeIII	GTNAC	1 cut(s)	344
MbiI	CCGCTC	1 cut(s)	386
MboII	GAAGA	2 cut(s)	49, 410
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	85, 154
MluCI	AATT	3 cut(s)	110, 179, 357
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	58
Mph1103I	ATGCAT	3 cut(s)	306, 406, 418
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	80, 301
NlaIII	CATG	5 cut(s)	275, 304, 308, 398, 416
NlaIV	GGNNCC	2 cut(s)	151, 195
NsbI	TGCGCA	1 cut(s)	291
NsiI	ATGCAT	3 cut(s)	306, 406, 418
NspI	RCATGY	2 cut(s)	304, 416
PaeI	GCATGC	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	28, 184, 220
PkrI	GCNGC	3 cut(s)	8, 127, 294
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	151, 195
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	399
SatI	GCNGC	3 cut(s)	7, 126, 293
SduI	GDGCHC	2 cut(s)	85, 154
SetI	ASST	7 cut(s)	51, 69, 95, 199, 265, 351, 378
SfaNI	GCATC	2 cut(s)	391, 413
SfcI	CTRYAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	3 cut(s)	110, 179, 357
SsiI	CCGC	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	351, 378
TasI	AATT	3 cut(s)	110, 179, 357
TfiI	GAWTC	3 cut(s)	28, 184, 220
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	3 cut(s)	6, 125, 292
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	357
XceI	RCATGY	2 cut(s)	304, 416
Zsp2I	ATGCAT	3 cut(s)	306, 406, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.