Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4531222 .. 4531977

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTCATCAACTCCAACGCTTTGATTATCGTATTTTTGTTCCATTTTCAATTGCTTCATGACGAGAACGACAGAGATATAACTAAGTTGACACGCTCAAGCGTTGAGTTGGTTGTCCCGAGTTTCATCAACCCTTACCCTGCCGCATTCTTGCCCTGTACATTTGTGGTCAAGGAGAACACTGAATCAAACTTTAACTCTGCCACCAAGTGTAGAAAAACCAAGGGTATTTTAGTAAATAAATTTTTGGAGTTGGAATTGCATGTTCTTCATTATCTTGATTCTGATGATAAAATCCCACATATAAGCATGGGAAGTTTTGGTGAGGCCGAAGTGAAAGAGATAGCGTTTGCGCTAGAGCACAGCGAACAGCGATTTATGTGGTCCCTACACCGACCCCCTCCCAAAGGCAAGAGAACTGTGCTAAGAGACTACAAGTATCTAAAGGCAGTCTTGCTTGAAGTGTTTCTTGATCGGACGACTTTAGTTGGAAATGTGATATGTTGGGCCACGCAGACAGCCATTATGACCCATCTGGTGATCAGAGGGTTTAATCGCATTACGGGTGGAATTCCTCATTGGAAAGTTTATGGAATGGATTATCGATTGCCACGTGACCAATGCACGCAGGGCAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

214

Amino Acids

24.57

Weight (kDa)

8.86

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	242, 570
AcvI	CACGTG	1 cut(s)	614
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	50, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	327, 507
ApoI	RAATTY	2 cut(s)	242, 570
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	384, 507
AsuHPI	GGTGA	2 cut(s)	335, 550
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	1 cut(s)	540
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	384, 507
BmiI	GGNNCC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	82
Bsa29I	ATCGAT	1 cut(s)	604
BsaAI	YACGTR	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	604
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	329, 509
BshVI	ATCGAT	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	101, 370
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	2 cut(s)	101, 370
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	329, 509
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	472, 540
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	329, 509
BspDI	ATCGAT	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	472, 540
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	421
BstAUI	TGTACA	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	2 cut(s)	84, 425
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	475, 543
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	472, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	329, 509
BsuTUI	ATCGAT	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	626
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	384, 507
ClaI	ATCGAT	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	59, 263, 310
CviJI	RGCY	3 cut(s)	329, 509, 521
CviKI_1	RGCY	3 cut(s)	329, 509, 521
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	84, 425
DpnI	GATC	2 cut(s)	474, 542
DpnII	GATC	2 cut(s)	472, 540
DraIII	CACNNNGTG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	384
Eco72I	CACGTG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	62, 266, 313
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 453, 485
FaqI	GGGAC	2 cut(s)	101, 370
FatI	CATG	3 cut(s)	58, 262, 309
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	329, 509
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	62, 266, 313
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	185, 281
HphI	GGTGA	2 cut(s)	335, 550
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	286, 477, 545
Hpy188III	TCNNGA	4 cut(s)	59, 118, 278, 470
Hpy8I	GTNNAC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	2 cut(s)	262, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	630
HpyF3I	CTNAG	2 cut(s)	84, 425
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	62, 266, 313
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	472, 540
LpnPI	CCDG	4 cut(s)	153, 169, 521, 614
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	2 cut(s)	474, 542
MboI	GATC	2 cut(s)	472, 540
MboII	GAAGA	1 cut(s)	260
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	4 cut(s)	50, 242, 257, 570
MmeI	TCCRAC	3 cut(s)	39, 234, 469
MnlI	CCTC	4 cut(s)	319, 411, 539, 585
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	195, 552
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	630
NdeII	GATC	2 cut(s)	472, 540
NlaIII	CATG	3 cut(s)	62, 266, 313
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	1 cut(s)	266
PagI	TCATGA	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PctI	GAATGC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	185, 281
PkrI	GCNGC	1 cut(s)	145
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
Ppu21I	YACGTR	1 cut(s)	614
PspCI	CACGTG	1 cut(s)	614
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	384, 507
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	195, 552
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	472, 540
Sau96I	GGNCC	2 cut(s)	384, 507
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	2 cut(s)	616, 641
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	4 cut(s)	50, 242, 257, 570
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	1 cut(s)	604
TasI	AATT	4 cut(s)	50, 242, 257, 570
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	185, 281
Tru1I	TTAA	2 cut(s)	195, 552
Tru9I	TTAA	2 cut(s)	195, 552
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	47, 115, 260
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	242, 570
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.