pycom09g06530

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
4781405 .. 4781859
455 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGGAATCATATGCCAAAGAGCAATCATGCATCTTCCCATCGGCCAATCAGAAGAAATTGCAGAGCGGGTTCAAATCTTTGCAAGAGGAATTGTCCCACAGCTATTTACGTTTGCCATAAACTGCCCCCAGCAGAGGTTTCTTCAAGCTCAGAACATAGTCAACCCTTACATGTCTATTGGAGTCTTCATCCTTCACATTCGTCTCACTTGGGGTGGTGTTTTTTGTAGTGGATTATTGTCTAACTGGGGCTGCTCTTACGCTGAGCTTGTCTTGGTGGCTTCTTGTCATTATTTATGGGCTTTACATTCTTCTGAGCCCCAAGTGCAAGGAGACTTGGACTGGCTTCTCTTGGAAATCTTTCAAAGGGTTGCGGCCTTTATTTTAAGTTGA

Protein Analysis

131

Amino Acids

14.68

Weight (kDa)

6.02

Isoelectric Point (pI)

63.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 2 cut(s) 67, 374
AcoI YGGCCR 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 74, 146, 365
AluBI AGCT 3 cut(s) 103, 149, 268
AluI AGCT 3 cut(s) 103, 149, 268
Alw26I GTCTC 2 cut(s) 209, 327
AoxI GGCC 2 cut(s) 43, 375
ApeKI GCWGC 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 209, 327
BisI GCNGC 2 cut(s) 253, 375
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 2 cut(s) 254, 376
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 251, 347
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 164, 255, 306
BseNI ACTGG 2 cut(s) 251, 347
BseXI GCAGC 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 45, 377
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 2 cut(s) 209, 327
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 45, 377
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 2 cut(s) 67, 374
BspANI GGCC 2 cut(s) 45, 377
BspCNI CTCAG 3 cut(s) 163, 256, 307
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 2 cut(s) 251, 347
BstDEI CTNAG 3 cut(s) 150, 264, 315
BstF5I GGATG 1 cut(s) 189
BstMAI GTCTC 2 cut(s) 209, 327
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 45, 377
BtsCI GGATG 1 cut(s) 189
CviAII CATG 2 cut(s) 28, 172
DdeI CTNAG 3 cut(s) 150, 264, 315
EaeI YGGCCR 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 2 cut(s) 31, 175
FaiI YATR 7 cut(s) 11, 13, 29, 119, 158, 173, 298
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 27, 171
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 253, 375
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 253, 375
GluI GCNGC 2 cut(s) 253, 375
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 45, 377
Hin1II CATG 2 cut(s) 31, 175
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 6, 183
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 52, 153, 316
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 31, 62, 83, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 150, 264, 315
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 31, 175
LpnPI CCDG 3 cut(s) 143, 232, 328
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 40
MaeII ACGT 1 cut(s) 110
MbiI CCGCTC 1 cut(s) 67
MboII GAAGA 5 cut(s) 26, 65, 134, 178, 303
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 57, 90
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 2 cut(s) 80, 129
Mph1103I ATGCAT 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeI CATATG 1 cut(s) 11
NlaIII CATG 2 cut(s) 31, 175
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 254, 376
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PscI ACATGT 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 253, 375
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 321
SetI ASST 5 cut(s) 105, 113, 140, 151, 270
SfaNI GCATC 1 cut(s) 40
Sse9I AATT 2 cut(s) 57, 90
SsiI CCGC 2 cut(s) 67, 374
TaiI ACGT 1 cut(s) 113
TasI AATT 2 cut(s) 57, 90
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 178
XceI RCATGY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.