Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5038302 .. 5039156

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATGGATCCACTTTGCAGATTTCAGAGATTCATCGATCATATTCGTTCATTGTACATTATTTATAGAGGATCTCCAGATCTTCTTGGCATACAAAAGTTGTATAAAGTATCTACATCTTCCAACGTGTCACGACAATTGGATAATTCCACCTCTGCCACGTGTCAGATCACCTTCACCTCGAAGTCCACTGTCGGTCACTGCTATGTGACGATATCTCACTCACCCCCGCCGCCGCCACCACCGCTTCTACAGCCACCGCAACCAGCCGCACCATGGACCAGGAAAACGACACCCAGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGGTCCGACCGCTTCAAGGTCCACCGCTTCCACCACGTCGAGTTCTGGTGCACCGACGCCACCAATGCCGCCCTCCGATTCTCCTGGGGACTGGGTAGCTAAGTCGGACCTATCCACCGGCAATCAAACCCACGCTTCCCACCTCCTCCGCTCCGGCGACCTCGTTTTCCTCTTCACCGCCCCGTACTCCCCCACCCTGACCCGAACCGCCAACCCGGCCAGGCCCAGAACCACGGCCTCTATCCCCACCTTCGACCACTCCGCCACCCACGGCCTTGGCGTCCGCGCCTTCGCCATCCAAGTCGAGGACGCCGTCTCGGCCTTCACAGCCAGTGTCGCCCACGGCGCCAAACCCTCGGCGGCCCCCATCCTCCTGGACAACCGCGTCACCATCGCCGAAGTCCAACTGTACGGTGATGTCGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0019439 GO:0019752 GO:0042802 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00350 ko00360 ko01100 map00130 map00350 map00360 map01100

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

257

Amino Acids

27.11

Weight (kDa)

9.27

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	686
AccBSI	CCGCTC	1 cut(s)	492
AccII	CGCG	2 cut(s)	627, 726
AclWI	GGATC	3 cut(s)	2, 15, 79
AcoI	YGGCCR	1 cut(s)	558
AcvI	CACGTG	1 cut(s)	162
AcyI	GRCGYC	4 cut(s)	398, 621, 651, 687
AfaI	GTAC	4 cut(s)	56, 329, 527, 752
AfiI	CCNNNNNNNGG	4 cut(s)	276, 341, 357, 646
AflIII	ACRYGT	2 cut(s)	126, 161
AgsI	TTSAA	2 cut(s)	303, 357
AjiI	CACGTC	1 cut(s)	378
AjnI	CCWGG	4 cut(s)	281, 424, 560, 714
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	3 cut(s)	2, 15, 79
AoxI	GGCC	6 cut(s)	558, 563, 576, 613, 660, 702
ApaLI	GTGCAC	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	629, 689
AspS9I	GGNCC	7 cut(s)	279, 332, 344, 360, 448, 564, 703
AsuC2I	CCSGG	2 cut(s)	342, 557
AsuHPI	GGTGA	6 cut(s)	163, 169, 216, 508, 721, 767
AvaII	GGWCC	5 cut(s)	279, 332, 344, 360, 448
BaeGI	GKGCMC	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	686
BbrPI	CACGTG	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	394
BccI	CCATC	3 cut(s)	644, 716, 740
BceAI	ACGGC	4 cut(s)	591, 628, 638, 700
BciT130I	CCWGG	4 cut(s)	283, 426, 562, 716
BcnI	CCSGG	2 cut(s)	342, 557
BcoDI	GTCTC	1 cut(s)	661
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	690
BglI	GCCNNNNNGGC	2 cut(s)	557, 659
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	5 cut(s)	233, 236, 270, 410, 702
BlsI	GCNGC	5 cut(s)	234, 237, 271, 411, 703
Bme1390I	CCNGG	6 cut(s)	283, 342, 426, 557, 562, 716
Bme18I	GGWCC	5 cut(s)	279, 332, 344, 360, 448
BmgBI	CACGTC	1 cut(s)	378
BmgT120I	GGNCC	7 cut(s)	279, 332, 344, 360, 448, 564, 703
BmiI	GGNNCC	3 cut(s)	9, 688, 705
BmrFI	CCNGG	6 cut(s)	283, 342, 426, 557, 562, 716
BmrI	ACTGGG	2 cut(s)	291, 442
BmuI	ACTGGG	2 cut(s)	291, 442
BpmI	CTGGAG	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	342, 557
Bsa29I	ATCGAT	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	162
BsaHI	GRCGYC	4 cut(s)	398, 621, 651, 687
BsaJI	CCNNGG	8 cut(s)	275, 340, 425, 573, 610, 616, 682, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 341, 357, 646
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	3 cut(s)	297, 437, 672
BseBI	CCWGG	4 cut(s)	283, 426, 562, 716
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	8 cut(s)	275, 340, 425, 573, 610, 616, 682, 696
BseGI	GGATG	2 cut(s)	636, 708
BseLI	CCNNNNNNNGG	4 cut(s)	276, 341, 357, 646
BseNI	ACTGG	3 cut(s)	297, 437, 672
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	627, 726
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	6 cut(s)	560, 565, 578, 615, 662, 704
BshNI	GGYRCC	1 cut(s)	686
BshVI	ATCGAT	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	4 cut(s)	342, 459, 495, 557
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	4 cut(s)	276, 341, 357, 646
BsmAI	GTCTC	1 cut(s)	661
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	6 cut(s)	560, 565, 578, 615, 662, 704
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	7, 37, 71, 79, 168
Bsp19I	CCATGG	1 cut(s)	275
BspANI	GGCC	6 cut(s)	560, 565, 578, 615, 662, 704
BspDI	ATCGAT	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	627, 726
BspLI	GGNNCC	3 cut(s)	9, 688, 705
BspPI	GGATC	3 cut(s)	2, 15, 79
BspT107I	GGYRCC	1 cut(s)	686
BsrBI	CCGCTC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	458
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	297, 437, 672
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	8 cut(s)	275, 340, 425, 573, 610, 616, 682, 696
BssMI	GATC	5 cut(s)	7, 37, 71, 79, 168
BssNI	GRCGYC	4 cut(s)	398, 621, 651, 687
BssT1I	CCWWGG	2 cut(s)	275, 616
Bst2UI	CCWGG	4 cut(s)	283, 426, 562, 716
Bst4CI	ACNGT	3 cut(s)	193, 750, 755
Bst6I	CTCTTC	1 cut(s)	518
BstACI	GRCGYC	4 cut(s)	398, 621, 651, 687
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	4 cut(s)	275, 573, 610, 682
BstF5I	GGATG	2 cut(s)	636, 708
BstFNI	CGCG	2 cut(s)	627, 726
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	629, 689
BstKTI	GATC	5 cut(s)	10, 40, 74, 82, 171
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	5 cut(s)	7, 37, 71, 79, 168
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	8 cut(s)	244, 253, 406, 557, 659, 668, 677, 686
BstNI	CCWGG	4 cut(s)	283, 426, 562, 716
BstSCI	CCNGG	6 cut(s)	281, 340, 424, 555, 560, 714
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	2 cut(s)	627, 726
BstX2I	RGATCY	3 cut(s)	7, 71, 79
BstXI	CCANNNNNNTGG	2 cut(s)	617, 715
BstYI	RGATCY	3 cut(s)	7, 71, 79
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	6 cut(s)	560, 565, 578, 615, 662, 704
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	4 cut(s)	275, 573, 610, 682
BtgZI	GCGATG	1 cut(s)	718
BtrI	CACGTC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	636, 708
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	189, 199, 679
CfoI	GCGC	2 cut(s)	629, 689
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	7 cut(s)	279, 332, 344, 360, 448, 564, 703
ClaI	ATCGAT	1 cut(s)	36
CpoI	CGGWCCG	1 cut(s)	344
CseI	GACGC	4 cut(s)	406, 610, 659, 715
Csp6I	GTAC	4 cut(s)	55, 328, 526, 751
CspI	CGGWCCG	1 cut(s)	344
CviAII	CATG	1 cut(s)	276
CviQI	GTAC	4 cut(s)	55, 328, 526, 751
DdeI	CTNAG	1 cut(s)	441
DinI	GGCGCC	1 cut(s)	688
DpnI	GATC	5 cut(s)	9, 39, 73, 81, 170
DpnII	GATC	5 cut(s)	7, 37, 71, 79, 168
DrdI	GACNNNNNNGTC	1 cut(s)	725
DseDI	GACNNNNNNGTC	1 cut(s)	725
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
EciI	GGCGGA	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	275, 616
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	5 cut(s)	279, 332, 344, 360, 448
Eco72I	CACGTG	1 cut(s)	162
EcoRII	CCWGG	4 cut(s)	281, 424, 560, 714
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	275, 616
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
ErhI	CCWWGG	2 cut(s)	275, 616
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	1 cut(s)	279
FaiI	YATR	6 cut(s)	42, 66, 92, 105, 207, 277
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	1 cut(s)	275
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	233, 236, 270, 410, 702
FokI	GGATG	2 cut(s)	623, 695
Fsp4HI	GCNGC	5 cut(s)	233, 236, 270, 410, 702
GlaI	GCGC	2 cut(s)	628, 688
GluI	GCNGC	5 cut(s)	233, 236, 270, 410, 702
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	6 cut(s)	560, 565, 578, 615, 662, 704
HapII	CCGG	4 cut(s)	342, 459, 495, 557
HgaI	GACGC	4 cut(s)	406, 610, 659, 715
HhaI	GCGC	2 cut(s)	629, 689
Hin1I	GRCGYC	4 cut(s)	398, 621, 651, 687
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	2 cut(s)	627, 687
HinP1I	GCGC	2 cut(s)	627, 687
HinfI	GANTC	2 cut(s)	30, 419
HpaII	CCGG	4 cut(s)	342, 459, 495, 557
HphI	GGTGA	6 cut(s)	163, 169, 216, 508, 721, 767
Hpy166II	GTNNAC	3 cut(s)	189, 363, 392
Hpy188I	TCNGA	5 cut(s)	27, 168, 348, 418, 448
Hpy188III	TCNNGA	2 cut(s)	77, 132
Hpy8I	GTNNAC	3 cut(s)	189, 363, 392
Hpy99I	CGWCG	2 cut(s)	382, 400
HpyAV	CCTTC	4 cut(s)	184, 601, 640, 673
HpyCH4III	ACNGT	3 cut(s)	193, 750, 755
HpyCH4IV	ACGT	3 cut(s)	126, 161, 377
HpyCH4V	TGCA	2 cut(s)	18, 392
HpyF10VI	GCNNNNNNNGC	8 cut(s)	244, 253, 406, 557, 659, 668, 677, 686
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	3 cut(s)	126, 161, 377
Hsp92I	GRCGYC	4 cut(s)	398, 621, 651, 687
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	2 cut(s)	627, 687
KasI	GGCGCC	1 cut(s)	686
Kzo9I	GATC	5 cut(s)	7, 37, 71, 79, 168
LmnI	GCTCC	1 cut(s)	497
MaeII	ACGT	3 cut(s)	126, 161, 377
MaeIII	GTNAC	4 cut(s)	129, 197, 208, 727
MalI	GATC	5 cut(s)	9, 39, 73, 81, 170
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	5 cut(s)	7, 37, 71, 79, 168
MboII	GAAGA	3 cut(s)	74, 111, 505
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	3 cut(s)	7, 71, 79
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	2 cut(s)	137, 145
Mly113I	GGCGCC	1 cut(s)	687
MmeI	TCCRAC	5 cut(s)	147, 344, 371, 426, 769
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	4 cut(s)	342, 459, 495, 557
MspR9I	CCNGG	6 cut(s)	283, 342, 426, 557, 562, 716
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	4 cut(s)	283, 426, 562, 716
MvnI	CGCG	2 cut(s)	627, 726
MwoI	GCNNNNNNNGC	8 cut(s)	244, 253, 406, 557, 659, 668, 677, 686
NarI	GGCGCC	1 cut(s)	687
NciI	CCSGG	2 cut(s)	342, 557
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	5 cut(s)	7, 37, 71, 79, 168
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	3 cut(s)	9, 688, 705
NmeAIII	GCCGAG	2 cut(s)	638, 677
NmuCI	GTSAC	4 cut(s)	129, 197, 208, 727
PcsI	WCGNNNNNNNCGW	3 cut(s)	618, 651, 759
PfeI	GAWTC	2 cut(s)	30, 419
Pfl23II	CGTACG	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	653
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	5 cut(s)	234, 237, 271, 411, 703
PluTI	GGCGCC	1 cut(s)	690
PmaCI	CACGTG	1 cut(s)	162
PmlI	CACGTG	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	162
Psp6I	CCWGG	4 cut(s)	281, 424, 560, 714
PspCI	CACGTG	1 cut(s)	162
PspGI	CCWGG	4 cut(s)	281, 424, 560, 714
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	9, 688, 705
PspPI	GGNCC	7 cut(s)	279, 332, 344, 360, 448, 564, 703
PsuI	RGATCY	3 cut(s)	7, 71, 79
PsyI	GACNNNGTC	1 cut(s)	653
RsaI	GTAC	4 cut(s)	56, 329, 527, 752
RsaNI	GTAC	4 cut(s)	55, 328, 526, 751
RseI	CAYNNNNRTG	1 cut(s)	204
Rsr2I	CGGWCCG	1 cut(s)	344
RsrII	CGGWCCG	1 cut(s)	344
SatI	GCNGC	5 cut(s)	233, 236, 270, 410, 702
Sau3AI	GATC	5 cut(s)	7, 37, 71, 79, 168
Sau96I	GGNCC	7 cut(s)	279, 332, 344, 360, 448, 564, 703
ScrFI	CCNGG	6 cut(s)	283, 342, 426, 557, 562, 716
SduI	GDGCHC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	251
SfoI	GGCGCC	1 cut(s)	688
SinI	GGWCC	5 cut(s)	279, 332, 344, 360, 448
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	137, 145
SspDI	GGCGCC	1 cut(s)	686
StyD4I	CCNGG	6 cut(s)	281, 340, 424, 555, 560, 714
StyI	CCWWGG	2 cut(s)	275, 616
TaaI	ACNGT	3 cut(s)	193, 750, 755
TaiI	ACGT	3 cut(s)	129, 164, 380
TaqI	TCGA	5 cut(s)	36, 182, 380, 594, 645
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	137, 145
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	5 cut(s)	235, 238, 272, 412, 704
TfiI	GAWTC	2 cut(s)	30, 419
TscAI	CASTG	3 cut(s)	196, 206, 679
TseFI	GTSAC	4 cut(s)	129, 197, 208, 727
Tsp45I	GTSAC	4 cut(s)	129, 197, 208, 727
TspDTI	ATGAA	2 cut(s)	22, 39
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	3 cut(s)	196, 206, 679
Tth111I	GACNNNGTC	1 cut(s)	653
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	5 cut(s)	279, 332, 344, 360, 448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.