Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5417097 .. 5418031

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCTTATTCATCTCAGGTTTCGATGATACTTTTTCTTTCTTTGTTCATAAATTCTTTGATGGCCATGGGTGCCCCAGCTGGAAATTTCCATCAAGACTTGGACATTACATTTGGAGATGGACGTGCTAAGATAGTTGACGAAGGAAAGTTTCTCACACTCAACCTTGATCAGGTTTCTGGGTCTGGTTTCAGATCTAAGAATGAGTATTTATTTGGAAGAATTGACATGCAAATCAAGTTGGTGTCTGGAAACTCAGCTGGAACTGTCACTACCTACTATTTATCTTCTGAAGGTTTGACTCATGACGAGATTGACTTTGAGTTTTTGGGTAATTCAACTGGTGAACCCTACACTCTCCATACAAATGTATTCTTGGTCGACAGCATTCCAATCAGAGTGTTCAACAATTTGGAATCAGCCAGAGTCCCATTCCCTAAAAACCAGCCCATGAGGGTTTACTCAAGTCTTTGGTGCGGACGACGGGGCAACAAGAGGTGGCCTTGTCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

172

Amino Acids

19.17

Weight (kDa)

5.89

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	31 - 125	9.5e-25	Glycosyl hydrolases family 16
Glyco_hydro_16	PF00722	124 - 162	2.9e-06	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	52, 85
AcuI	CTGAAG	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	339, 406
AjiI	CACGTC	1 cut(s)	125
AluBI	AGCT	2 cut(s)	80, 260
AluI	AGCT	2 cut(s)	80, 260
AoxI	GGCC	2 cut(s)	63, 500
ApoI	RAATTY	2 cut(s)	52, 85
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AsuHPI	GGTGA	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	71
BccI	CCATC	3 cut(s)	55, 99, 113
BclI	TGATCA	1 cut(s)	169
BglII	AGATCT	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	29, 270
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	65, 502
BshNI	GGYRCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	65, 502
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	169, 194
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	65, 502
BspCNI	CTCAG	2 cut(s)	28, 269
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	169, 194
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	268
BstDEI	CTNAG	4 cut(s)	15, 129, 198, 256
BstDSI	CCRYGG	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	172, 197
BstMBI	GATC	2 cut(s)	169, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	65, 502
BtgI	CCRYGG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	304
CviAII	CATG	4 cut(s)	67, 229, 305, 451
CviJI	RGCY	6 cut(s)	65, 80, 260, 422, 448, 502
CviKI_1	RGCY	6 cut(s)	65, 80, 260, 422, 448, 502
DdeI	CTNAG	4 cut(s)	15, 129, 198, 256
DpnI	GATC	2 cut(s)	171, 196
DpnII	GATC	2 cut(s)	169, 194
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	70, 232, 308, 454
FaiI	YATR	6 cut(s)	50, 68, 230, 306, 363, 452
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	4 cut(s)	66, 228, 304, 450
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	381
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	65, 502
Hin1II	CATG	4 cut(s)	70, 232, 308, 454
HincII	GTYRAC	2 cut(s)	139, 382
HindII	GTYRAC	2 cut(s)	139, 382
HinfI	GANTC	3 cut(s)	301, 416, 426
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	4 cut(s)	139, 347, 382, 460
Hpy188I	TCNGA	3 cut(s)	194, 292, 398
Hpy188III	TCNNGA	4 cut(s)	95, 249, 305, 509
Hpy8I	GTNNAC	4 cut(s)	139, 347, 382, 460
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	137, 287
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	4 cut(s)	15, 129, 198, 256
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	70, 232, 308, 454
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	169, 194
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	171, 196
MboI	GATC	2 cut(s)	169, 194
MboII	GAAGA	2 cut(s)	231, 279
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	5 cut(s)	52, 85, 222, 334, 409
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	295, 435
MnlI	CCTC	2 cut(s)	447, 489
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	80, 260
Mva1269I	GAATGC	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	169, 194
NlaIII	CATG	4 cut(s)	70, 232, 308, 454
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	232
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	416
PleI	GAGTC	2 cut(s)	295, 434
PpsI	GAGTC	2 cut(s)	295, 434
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	73
PsrI	GAACNNNNNNTAC	2 cut(s)	256, 288
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	2 cut(s)	80, 260
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	380
Sau3AI	GATC	2 cut(s)	169, 194
SchI	GAGTC	2 cut(s)	295, 435
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	9 cut(s)	21, 82, 127, 168, 177, 262, 278, 298, 500
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	5 cut(s)	52, 85, 222, 334, 409
SsiI	CCGC	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	23, 381
TasI	AATT	5 cut(s)	52, 85, 222, 334, 409
TfiI	GAWTC	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	52, 85
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.