pycom09g07800

ABC transporter E family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Reverse (-)
5957332 .. 5957610
279 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGCGAAGAAAACTGCGTTGGTGGTTGAGCACGATTTCATTATGGCTACGTACGTACCTGGCAGATAGAGTGATCGTCTATGACGGGAAGCCAGGAGTTGATTGTACTGCCAATTCTCCTCAATCGTTGTTAACCTGGGATGAACCTTTTCTTATCTGTAACTCTTGCAACCTTTTTATCTGTGACTTTTTTTACATACAAACAACAACAACAAAGCCTTTTCCTACTAAGTGGGATCGGCTGACTTTTTTTTACATAAATAATAATAAATCTGAGTAA

Protein Analysis

93

Amino Acids

11.03

Weight (kDa)

8.78

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 243
AfaI GTAC 3 cut(s) 52, 56, 106
AjnI CCWGG 3 cut(s) 57, 91, 134
AjuI GAANNNNNNNTTGG 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 147
BaeI ACNNNNGTAYC 2 cut(s) 38, 71
Bbv12I GWGCWC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 59, 93, 136
Bme1390I CCNGG 3 cut(s) 59, 93, 136
BmrFI CCNGG 3 cut(s) 59, 93, 136
BsaAI YACGTR 2 cut(s) 50, 54
BsaJI CCNNGG 1 cut(s) 135
BseBI CCWGG 3 cut(s) 59, 93, 136
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 32
BsiWI CGTACG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 72, 235
BspCNI CTCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 72, 235
Bst2UI CCWGG 3 cut(s) 59, 93, 136
BstBAI YACGTR 2 cut(s) 50, 54
BstDEI CTNAG 2 cut(s) 228, 273
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 75, 238
BstMBI GATC 2 cut(s) 72, 235
BstNI CCWGG 3 cut(s) 59, 93, 136
BstSCI CCNGG 3 cut(s) 57, 91, 134
BstSNI TACGTA 2 cut(s) 50, 54
BtsCI GGATG 1 cut(s) 145
Csp6I GTAC 3 cut(s) 51, 55, 105
CviJI RGCY 4 cut(s) 46, 91, 217, 241
CviKI_1 RGCY 4 cut(s) 46, 91, 217, 241
CviQI GTAC 3 cut(s) 51, 55, 105
DdeI CTNAG 2 cut(s) 228, 273
DpnI GATC 2 cut(s) 74, 237
DpnII GATC 2 cut(s) 72, 235
Eco105I TACGTA 2 cut(s) 50, 54
EcoRII CCWGG 3 cut(s) 57, 91, 134
FaiI YATR 4 cut(s) 43, 81, 197, 257
FokI GGATG 1 cut(s) 152
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HpaI GTTAAC 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4IV ACGT 2 cut(s) 49, 53
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 228, 273
HpySE526I ACGT 2 cut(s) 49, 53
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 72, 235
LpnPI CCDG 6 cut(s) 44, 71, 78, 105, 121, 148
MaeII ACGT 2 cut(s) 49, 53
MaeIII GTNAC 2 cut(s) 158, 182
MalI GATC 2 cut(s) 74, 237
MboI GATC 2 cut(s) 72, 235
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 112
MnlI CCTC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 131
MspR9I CCNGG 3 cut(s) 59, 93, 136
MvaI CCWGG 3 cut(s) 59, 93, 136
NdeII GATC 2 cut(s) 72, 235
NmuCI GTSAC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 147
Pfl23II CGTACG 1 cut(s) 50
Ppu21I YACGTR 2 cut(s) 50, 54
Psp6I CCWGG 3 cut(s) 57, 91, 134
PspGI CCWGG 3 cut(s) 57, 91, 134
PspLI CGTACG 1 cut(s) 50
RsaI GTAC 3 cut(s) 52, 56, 106
RsaNI GTAC 3 cut(s) 51, 55, 105
SaqAI TTAA 1 cut(s) 131
Sau3AI GATC 2 cut(s) 72, 235
ScrFI CCNGG 3 cut(s) 59, 93, 136
SduI GDGCHC 1 cut(s) 32
SetI ASST 6 cut(s) 52, 56, 60, 137, 148, 174
SgeI CNNG 9 cut(s) 43, 70, 71, 97, 104, 105, 147, 148, 177
SnaBI TACGTA 2 cut(s) 50, 54
Sse9I AATT 1 cut(s) 112
StyD4I CCNGG 3 cut(s) 57, 91, 134
TaiI ACGT 2 cut(s) 52, 56
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 104
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 27, 156
XmnI GAANNNNTTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.