pycom09g08570

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
6587569 .. 6588111
543 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGTTGTGCTACTGTAGGATGGTTTACATGCCTATGTCCTATTTATATGGGAAAAGATTTGTTGGTCCAATCACACCTCTCATACTACAATTAAGGGAAGAACTCTATGCTCAACCTTGTGACGAAATCAACTGGAGGGAGTGCGTCATCACTGCGCTAAAGAGGACATCTACTACCCTCATCCTTGGATACAGGACTTTCTGTGGGATAGTCTGTACATATGTACGGAGCCTCTTCTTACTCGCTGGCCATTTTACAAGCTGGCTTGTTGGGCTGAAGATCGATATGGGGATTATTTTAAAAAGCATCTTGCCAGGATACCAGATTATTTATGGGTTGCCGAGGATGGGATGA

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

9.13

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 2 cut(s) 217, 225
AfiI CCNNNNNNNGG 1 cut(s) 347
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
AoxI GGCC 1 cut(s) 247
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 65
AvaII GGWCC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 249
BccI CCATC 2 cut(s) 13, 340
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 2 cut(s) 182, 311
BfmI CTRYAG 1 cut(s) 13
BfuI GTATCC 2 cut(s) 182, 311
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 184, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 184, 341
BseGI GGATG 3 cut(s) 24, 180, 351
BseLI CCNNNNNNNGG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 137
BshFI GGCC 1 cut(s) 249
BshVI ATCGAT 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 279
BspANI GGCC 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 184, 341
BssMI GATC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 247, 263
BstF5I GGATG 3 cut(s) 24, 180, 351
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 2 cut(s) 182, 311
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 3 cut(s) 24, 180, 351
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 247, 263
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 216, 224
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 231, 249, 261, 265, 274
CviKI_1 RGCY 5 cut(s) 231, 249, 261, 265, 274
CviQI GTAC 2 cut(s) 216, 224
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
DraI TTTAAA 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 31
FatI CATG 1 cut(s) 27
FauNDI CATATG 1 cut(s) 220
FokI GGATG 2 cut(s) 31, 167
GlaI GCGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 1 cut(s) 249
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 7 cut(s) 118, 178, 231, 247, 300, 327, 335
LweI GCATC 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 3 cut(s) 110, 226, 289
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 249
MnlI CCTC 6 cut(s) 87, 129, 156, 188, 242, 336
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 2 cut(s) 92, 299
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 65
RsaI GTAC 2 cut(s) 217, 225
RsaNI GTAC 2 cut(s) 216, 224
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 92, 299
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 315
SetI ASST 3 cut(s) 79, 118, 263
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 13
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 215
Tru1I TTAA 2 cut(s) 92, 299
Tru9I TTAA 2 cut(s) 92, 299
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 65
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.