pycom09g09120

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
7264082 .. 7266039
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
ATGAGGCCCATTCCTCATGTTCGTCGTCCTAAAATGACACCCTTTTCTGGAATGTCTGAGGTAGATGGGCATGAAGGAGGCCAAGTCAAGGCTCATATGCCTCCTCCTCCTCCACCCACAAAGCTCAGTATTGTTGGATTAACTCCTACAACACAACGAAAATCATACTCAAGCTCTTCTCAGGCTAAGCAGATTATTTCCTTGAATCCTTTGCCATTAAAGAAACATGGTTGTGGTAGAAGCCCAATACATTCTTGCTTAGAGGAGGAGTTTTTGAAGGATGTAATGCAGTTTCTAATTCTCCGAGGACATAATCGGCTCATTCCCCAAGGTGGACTCGCTGAGTTTCCAGATGCCATTCTCAATGGAAAGCGTCTTGACCTGTACAACTTATATAAAGAGGTGGTTACAAGAGGAGGCTTTCATGTTGGCAATGGCATCAACTGGAAAGGACAGATCTTCTCAAAAATGCGCAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTTAAACGACACTACGAAACTTACCTTCTAGAATACGAATTGGCTCATGATGATGTAGATGGAGAGTGCTGCTTATTGTGTCACAGTAGTGCAGCAGGGGATTGGGTAAACTGTGGAATATGCGGTGAGTGGGCTCACTTTGGCTGCGACAGAAGGCAGGGCCTTGGTGCTTTTAAGGATTATGCAAAAACAGATGGACTGGAGTACATATGTCCACATTGCAGCATCAGCAATTTCAAGAAGAAACCACAGAAAATTGCAAATGGATTTTCCCAAGGCTCAACTGTATCACGGCCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

273

Amino Acids

30.3

Weight (kDa)

9.12

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 88 - 185 2.1e-14 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 473
AciI CCGC 1 cut(s) 639
AcoI YGGCCR 1 cut(s) 809
AfaI GTAC 2 cut(s) 386, 722
AfiI CCNNNNNNNGG 3 cut(s) 47, 88, 332
AgsI TTSAA 3 cut(s) 205, 277, 754
AleI CACNNNNGTG 1 cut(s) 603
AluBI AGCT 2 cut(s) 124, 174
AluI AGCT 2 cut(s) 124, 174
AoxI GGCC 4 cut(s) 5, 79, 676, 809
ApeKI GCWGC 4 cut(s) 585, 608, 660, 738
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 6, 676
AsuHPI GGTGA 1 cut(s) 653
BanII GRGCYC 1 cut(s) 652
BbvI GCAGC 4 cut(s) 572, 620, 647, 750
BccI CCATC 3 cut(s) 59, 569, 704
BfaI CTAG 1 cut(s) 545
BglII AGATCT 1 cut(s) 456
BisI GCNGC 4 cut(s) 586, 609, 661, 739
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 4 cut(s) 587, 610, 662, 740
BmgT120I GGNCC 2 cut(s) 6, 676
BmsI GCATC 3 cut(s) 343, 447, 750
BpmI CTGGAG 1 cut(s) 737
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 154
BsaJI CCNNGG 4 cut(s) 304, 328, 679, 790
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 88, 332
Bse1I ACTGG 3 cut(s) 449, 505, 720
Bse3DI GCAATG 2 cut(s) 439, 733
BseDI CCNNGG 4 cut(s) 304, 328, 679, 790
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 47, 88, 332
BseMI GCAATG 2 cut(s) 439, 733
BseMII CTCAG 4 cut(s) 48, 139, 194, 333
BseNI ACTGG 3 cut(s) 449, 505, 720
BseRI GAGGAG 6 cut(s) 93, 96, 99, 278, 281, 429
BseXI GCAGC 4 cut(s) 572, 620, 647, 750
BsgI GTGCAG 1 cut(s) 627
BshFI GGCC 4 cut(s) 7, 81, 678, 811
BslI CCNNNNNNNGG 3 cut(s) 47, 88, 332
BsnI GGCC 4 cut(s) 7, 81, 678, 811
Bsp1286I GDGCHC 1 cut(s) 652
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 1 cut(s) 456
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 1 cut(s) 639
BspANI GGCC 4 cut(s) 7, 81, 678, 811
BspCNI CTCAG 4 cut(s) 49, 138, 193, 334
BspHI TCATGA 1 cut(s) 562
BspQI GCTCTTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 439, 733
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 3 cut(s) 449, 505, 720
BssECI CCNNGG 4 cut(s) 304, 328, 679, 790
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 3 cut(s) 328, 679, 790
Bst4CI ACNGT 4 cut(s) 602, 629, 802, 816
Bst6I CTCTTC 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 384
BstDEI CTNAG 6 cut(s) 57, 125, 180, 186, 259, 342
BstF5I GGATG 1 cut(s) 286
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 744
BstV1I GCAGC 4 cut(s) 572, 620, 647, 750
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 4 cut(s) 7, 81, 678, 811
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 812
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 2 cut(s) 6, 676
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 385, 721
CviAII CATG 5 cut(s) 17, 71, 227, 425, 563
CviQI GTAC 2 cut(s) 385, 721
DdeI CTNAG 6 cut(s) 57, 125, 180, 186, 259, 342
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 809
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 3 cut(s) 328, 679, 790
Eco24I GRGCYC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 676
EcoT14I CCWWGG 3 cut(s) 328, 679, 790
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 3 cut(s) 328, 679, 790
FaeI CATG 5 cut(s) 20, 74, 230, 428, 566
FatI CATG 5 cut(s) 16, 70, 226, 424, 562
FauNDI CATATG 2 cut(s) 96, 725
Fnu4HI GCNGC 4 cut(s) 586, 609, 661, 739
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 4 cut(s) 586, 609, 661, 739
FspBI CTAG 1 cut(s) 545
FspI TGCGCA 1 cut(s) 473
GlaI GCGC 1 cut(s) 473
GluI GCNGC 4 cut(s) 586, 609, 661, 739
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 4 cut(s) 7, 81, 678, 811
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 474
Hin1II CATG 5 cut(s) 20, 74, 230, 428, 566
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HinfI GANTC 2 cut(s) 205, 336
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 3 cut(s) 335, 625, 731
Hpy188I TCNGA 2 cut(s) 58, 305
Hpy188III TCNNGA 6 cut(s) 48, 350, 377, 545, 563, 754
Hpy8I GTNNAC 3 cut(s) 335, 625, 731
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 68, 271, 551, 663
HpyCH4III ACNGT 4 cut(s) 602, 629, 802, 816
HpyCH4V TGCA 5 cut(s) 289, 608, 701, 738, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 744
HpyF3I CTNAG 6 cut(s) 57, 125, 180, 186, 259, 342
Hsp92II CATG 5 cut(s) 20, 74, 230, 428, 566
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 1 cut(s) 456
LguI GCTCTTC 1 cut(s) 181
LpnPI CCDG 9 cut(s) 33, 167, 363, 395, 430, 486, 597, 659, 701
Lsp1109I GCAGC 4 cut(s) 572, 620, 647, 750
LweI GCATC 3 cut(s) 343, 447, 750
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 406, 596
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 3 cut(s) 168, 451, 769
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 5 cut(s) 297, 475, 554, 748, 771
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 115, 487
MseI TTAA 4 cut(s) 140, 218, 519, 690
MslI CAYNNNNRTG 3 cut(s) 231, 567, 603
MwoI GCNNNNNNNGC 1 cut(s) 744
NdeI CATATG 2 cut(s) 96, 725
NdeII GATC 1 cut(s) 456
NlaIII CATG 5 cut(s) 20, 74, 230, 428, 566
NmuCI GTSAC 1 cut(s) 596
NsbI TGCGCA 1 cut(s) 473
OliI CACNNNNGTG 1 cut(s) 603
PagI TCATGA 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 4 cut(s) 587, 610, 662, 740
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 6, 676
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 2 cut(s) 386, 722
RsaNI GTAC 2 cut(s) 385, 721
RseI CAYNNNNRTG 3 cut(s) 231, 567, 603
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 4 cut(s) 140, 218, 519, 690
SatI GCNGC 4 cut(s) 586, 609, 661, 739
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 6, 676
SchI GAGTC 1 cut(s) 330
SduI GDGCHC 1 cut(s) 652
SetI ASST 7 cut(s) 63, 126, 176, 334, 384, 405, 543
SfaNI GCATC 3 cut(s) 343, 447, 750
SmiMI CAYNNNNRTG 3 cut(s) 231, 567, 603
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 5 cut(s) 297, 475, 554, 748, 771
SsiI CCGC 1 cut(s) 639
SspMI CTAG 1 cut(s) 545
StyI CCWWGG 3 cut(s) 328, 679, 790
TaaI ACNGT 4 cut(s) 602, 629, 802, 816
TasI AATT 5 cut(s) 297, 475, 554, 748, 771
TatI WGTACW 2 cut(s) 384, 720
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 4 cut(s) 140, 218, 519, 690
Tru9I TTAA 4 cut(s) 140, 218, 519, 690
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 4 cut(s) 585, 608, 660, 738
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 2 cut(s) 87, 413
TspRI CASTG 1 cut(s) 819
XbaI TCTAGA 1 cut(s) 544
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.