pycom09g09360

CCAAT enhancer-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
7489989 .. 7490558
570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGAAGGCGCTGCAGATTTGTTCGACGTGGATGGTGGTGGCGGTGATGACAGCGATAACGAAGAGATTGACAATATGCTGGATTCCGCTGGTGTTTCTATTGAAGCAGATGGTGACTATGATTACGATCGATCTGGACCAAGTTGCCAATGAAGATGATGAAGACTTGGTTGCTAATGTCAGTGATACTGAGCTGGACCTGGCCTCAGACAGTGGGGAGGGCGAAGACTTTGATGCCATTGCGGACGATGGCCAGAGTGACGACAACGACATCGATATAGGAGATGCAGACGACGACGACATTGACTTAGGAGATGCAGACGACAACGACATTGACATAGGTGATGCAGACGACGACGACATTGACATAGGTGATGCAGATGACGGCATCGACGAGGATGAGAGGAAGAATGTTATAAGCAAAAGTAAACGGAAGCGAGGGAAGTCTGGAGCATCCCCGTTTGCTAGTCTTGAAGAATATGAGCATCTGTTGAACGACGATGTTCCTGCTGATAAGGAAACTAGAAAAAAGAAGCCGAAATCTCGAAAGAAGAGAAAGTCGTCCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBF

Protein Analysis

190

Amino Acids

20.83

Weight (kDa)

4.07

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AciI CCGC 3 cut(s) 41, 86, 242
AcoI YGGCCR 1 cut(s) 250
AgsI TTSAA 3 cut(s) 103, 473, 493
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
AoxI GGCC 2 cut(s) 201, 250
ApeKI GCWGC 1 cut(s) 10
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 136, 196
AsuHPI GGTGA 4 cut(s) 55, 124, 353, 383
AvaII GGWCC 2 cut(s) 136, 196
BalI TGGCCA 1 cut(s) 252
BbsI GAAGAC 2 cut(s) 168, 231
BccI CCATC 3 cut(s) 25, 103, 242
BceAI ACGGC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 200
BfaI CTAG 2 cut(s) 465, 522
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 2 cut(s) 136, 196
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 136, 196
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 8 cut(s) 223, 274, 304, 334, 364, 396, 461, 493
BpiI GAAGAC 2 cut(s) 168, 231
BpmI CTGGAG 1 cut(s) 468
Bsa29I ATCGAT 2 cut(s) 129, 273
BsaBI GATNNNNATC 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 125
BseBI CCWGG 1 cut(s) 200
BseCI ATCGAT 2 cut(s) 129, 273
BseGI GGATG 3 cut(s) 36, 403, 452
BseJI GATNNNNATC 1 cut(s) 125
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 180, 219
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 203, 252
BshVI ATCGAT 2 cut(s) 129, 273
BsiEI CGRYCG 1 cut(s) 129
BsnI GGCC 2 cut(s) 203, 252
Bsp143I GATC 2 cut(s) 126, 130
BspACI CCGC 3 cut(s) 41, 86, 242
BspANI GGCC 2 cut(s) 203, 252
BspCNI CTCAG 2 cut(s) 181, 218
BspDI ATCGAT 2 cut(s) 129, 273
BspMAI CTGCAG 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 237
BssMI GATC 2 cut(s) 126, 130
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 2 cut(s) 56, 545
BstDEI CTNAG 3 cut(s) 189, 205, 307
BstF5I GGATG 3 cut(s) 36, 403, 452
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 129, 133
BstMBI GATC 2 cut(s) 126, 130
BstMCI CGRYCG 1 cut(s) 129
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 11
BstV2I GAAGAC 2 cut(s) 168, 231
Bsu15I ATCGAT 2 cut(s) 129, 273
BsuRI GGCC 2 cut(s) 203, 252
BsuTUI ATCGAT 2 cut(s) 129, 273
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 36, 403, 452
BtsIMutI CAGTG 2 cut(s) 187, 217
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 136, 196
ClaI ATCGAT 2 cut(s) 129, 273
CviJI RGCY 4 cut(s) 193, 203, 252, 535
CviKI_1 RGCY 4 cut(s) 193, 203, 252, 535
DdeI CTNAG 3 cut(s) 189, 205, 307
DpnI GATC 2 cut(s) 128, 132
DpnII GATC 2 cut(s) 126, 130
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 56, 545
EarI CTCTTC 2 cut(s) 56, 545
Eco47I GGWCC 2 cut(s) 136, 196
EcoRII CCWGG 1 cut(s) 198
FaiI YATR 7 cut(s) 76, 119, 278, 338, 368, 416, 480
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 3 cut(s) 43, 410, 439
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 2 cut(s) 465, 522
GlaI GCGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 2 cut(s) 203, 252
HhaI GCGC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 82
HphI GGTGA 4 cut(s) 55, 124, 353, 383
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 208, 565
Hpy188III TCNNGA 4 cut(s) 134, 447, 470, 543
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 7 cut(s) 28, 296, 299, 356, 359, 395, 500
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 13, 287, 317, 347, 377
HpyF3I CTNAG 3 cut(s) 189, 205, 307
HpySE526I ACGT 1 cut(s) 26
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 126, 130
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 9 cut(s) 64, 74, 119, 179, 185, 212, 266, 432, 519
LweI GCATC 8 cut(s) 223, 274, 304, 334, 364, 396, 461, 493
MaeI CTAG 2 cut(s) 465, 522
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 112, 257
MalI GATC 2 cut(s) 128, 132
MboI GATC 2 cut(s) 126, 130
MboII GAAGA 7 cut(s) 73, 164, 173, 236, 418, 485, 562
MlsI TGGCCA 1 cut(s) 252
MluNI TGGCCA 1 cut(s) 252
MnlI CCTC 5 cut(s) 211, 214, 388, 396, 431
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
NdeII GATC 2 cut(s) 126, 130
NmuCI GTSAC 2 cut(s) 112, 257
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 12
Ple19I CGATCG 1 cut(s) 129
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 2 cut(s) 136, 196
PstI CTGCAG 1 cut(s) 15
PvuI CGATCG 1 cut(s) 129
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 2 cut(s) 126, 130
Sau96I GGNCC 2 cut(s) 136, 196
ScrFI CCNGG 1 cut(s) 200
SetI ASST 5 cut(s) 29, 195, 201, 343, 373
SfaNI GCATC 8 cut(s) 223, 274, 304, 334, 364, 396, 461, 493
SfcI CTRYAG 1 cut(s) 11
SinI GGWCC 2 cut(s) 136, 196
SsiI CCGC 3 cut(s) 41, 86, 242
SspMI CTAG 2 cut(s) 465, 522
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 29
TaqI TCGA 5 cut(s) 23, 129, 273, 390, 544
TfiI GAWTC 1 cut(s) 82
TscAI CASTG 2 cut(s) 187, 217
TseFI GTSAC 2 cut(s) 112, 257
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 2 cut(s) 112, 257
TspDTI ATGAA 3 cut(s) 17, 165, 174
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 2 cut(s) 187, 217
VpaK11BI GGWCC 2 cut(s) 136, 196
XspI CTAG 2 cut(s) 465, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.