pycom09g09920

Belongs to the STXBP unc-18 SEC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
8045699 .. 8046173
475 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGAAATCTGTTTATTTTTTTGGGTTTTGTGTGTTGAGTTTGATCTATGAATTTGATTTGAGAACTGTGACGAAATTTCATAATTTGCTCGATTGGCCATTCCAACATTCATATTCGATTCATCAGATTTCAAAGGTGCATGATCAGTATTTGGAGTTTGTGATACTGGAAGATAATTTGTTCTCATTGGTACAGAAGAACAGTAATGTTCAGTTAAATGATCCCAAGGCAGGGGACCGTGAGATTGAGGACATTGTTGAACAGATAGTTGGTGGCTTGTTCTTTAGCTACACTTGCTGTTGTGCCAATTATCAGGTGCCTTCGTGGCTTCGTGCCCGTACGTCAGGCGCAACCGGAACAAGACGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec1

Protein Analysis

124

Amino Acids

14.31

Weight (kDa)

6.03

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 39 - 94 8e-07 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 2 cut(s) 50, 74
AfaI GTAC 2 cut(s) 192, 340
AfiI CCNNNNNNNGG 2 cut(s) 230, 231
AgsI TTSAA 2 cut(s) 132, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 50, 74
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 235
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 337
BalI TGGCCA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 316
BclI TGATCA 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 236, 318
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 231
Bse1I ACTGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 230, 231
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 337
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 354
BsiWI CGTACG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 230, 231
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 3 cut(s) 42, 142, 220
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 236, 318
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 42, 142, 220
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 67, 203, 239
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 3 cut(s) 45, 145, 223
BstMBI GATC 3 cut(s) 42, 142, 220
BstMWI GCNNNNNNNGC 3 cut(s) 94, 294, 325
BstSLI GKGCMC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 97
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 191, 339
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 97, 276, 288, 328
CviKI_1 RGCY 4 cut(s) 97, 276, 288, 328
CviQI GTAC 2 cut(s) 191, 339
DpnI GATC 3 cut(s) 44, 144, 222
DpnII GATC 3 cut(s) 42, 142, 220
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 48, 81, 112, 141
FalI AAGNNNNNCTT 1 cut(s) 352
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 142
GlaI GCGC 1 cut(s) 349
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 354
HhaI GCGC 1 cut(s) 350
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 3 cut(s) 67, 203, 239
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 294, 325
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 42, 142, 220
LpnPI CCDG 5 cut(s) 152, 216, 299, 330, 367
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 44, 144, 222
MboI GATC 3 cut(s) 42, 142, 220
MboII GAAGA 2 cut(s) 182, 208
MhlI GDGCHC 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 5 cut(s) 50, 74, 82, 175, 307
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 94, 294, 325
NdeII GATC 3 cut(s) 42, 142, 220
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 236, 318
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 118
Pfl23II CGTACG 1 cut(s) 338
PspLI CGTACG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 236, 318
PspPI GGNCC 1 cut(s) 235
RsaI GTAC 2 cut(s) 192, 340
RsaNI GTAC 2 cut(s) 191, 339
SaqAI TTAA 1 cut(s) 215
Sau3AI GATC 3 cut(s) 42, 142, 220
Sau96I GGNCC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 337
SetI ASST 4 cut(s) 138, 290, 318, 344
SinI GGWCC 1 cut(s) 235
Sse9I AATT 5 cut(s) 50, 74, 82, 175, 307
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 67, 203, 239
TaiI ACGT 1 cut(s) 344
TaqI TCGA 2 cut(s) 90, 116
TasI AATT 5 cut(s) 50, 74, 82, 175, 307
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 17, 63, 68, 99, 110
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 2 cut(s) 50, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.