pycom09g10540
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
8615756 .. 8616545
790 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
ATGTCTACCAAGATCGAGCATGACAAATCATCTAGAGGATTTTCCTTCCCTGCAAGGACCAACTATTCTAGAAAGCCCGACTTCATCCGAGAAGTCAGGAGGGAAGATTTGGAGTACTCTACTCTAAAGAGTGGTTATGCCAGGGACATGATGAGGGAAGAGAGCCCTGAGAAAGAACTAGTTATCCCCCTATTTCGTGTGCTTAAGGAAAATAGGGATAAGGGAAAAAACAAGGAAGGATCTGGAGTTAGTCAGCCAATATTGGAAGAGATCTTGGAAACAGAGTTGGCCAACCCCTTATTATTTTCATTAGGTAGTAGGGGGCAGAGCGAGCAAGAAAGAAAGAAGTATGGGATGTCCCAGTTAATCGGAGTATCTAGTGGAAAAGGTAAGCCTACCAAGGCAGACAAGTCTCATCCATATAGGCCCTTACCATTGGCCAGTAAGGGAGGGGATGCCAAGTGGAAACAGCTCGACCCAAAGAAGGAAACCTTCTCGAGTAGTGATCACAGCTCGAAATTGGGAGCCTCACATACCCCATATAACAGTACAGCTAACCAGCATCTTAGAGATAAGTTACTTGTCCGCTATTCAAGATCACTTACCAGAAGCCATACATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

23.37

Weight (kDa)

9.78

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 586
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 2 cut(s) 288, 438
AfaI GTAC 2 cut(s) 116, 550
AfiI CCNNNNNNNGG 1 cut(s) 484
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 594
AhlI ACTAGT 1 cut(s) 178
AjnI CCWGG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 472, 513, 554
AluI AGCT 3 cut(s) 472, 513, 554
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 3 cut(s) 288, 425, 438
AspS9I GGNCC 2 cut(s) 57, 426
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 2 cut(s) 290, 440
BanII GRGCYC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 4 cut(s) 33, 69, 179, 378
BfrI CTTAAG 1 cut(s) 203
BglII AGATCT 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 57, 426
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 445, 571
BmuI ACTGGG 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 141, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 361, 441
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 141, 399
BseGI GGATG 4 cut(s) 84, 360, 415, 460
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 361, 441
BshFI GGCC 3 cut(s) 290, 427, 440
BsiHKCI CYCGRG 1 cut(s) 496
BslFI GGGAC 2 cut(s) 158, 343
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 158, 343
BsnI GGCC 3 cut(s) 290, 427, 440
BsoBI CYCGRG 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 5 cut(s) 12, 239, 270, 505, 596
BspACI CCGC 1 cut(s) 586
BspANI GGCC 3 cut(s) 290, 427, 440
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 1 cut(s) 247
BspTI CTTAAG 1 cut(s) 203
BsrI ACTGG 2 cut(s) 361, 441
BssECI CCNNGG 2 cut(s) 141, 399
BssMI GATC 5 cut(s) 12, 239, 270, 505, 596
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 153, 261
BstAFI CTTAAG 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 168, 566
BstF5I GGATG 4 cut(s) 84, 360, 415, 460
BstKTI GATC 5 cut(s) 15, 242, 273, 508, 599
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 5 cut(s) 12, 239, 270, 505, 596
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 239, 270
BstYI RGATCY 2 cut(s) 239, 270
BsuRI GGCC 3 cut(s) 290, 427, 440
BtsCI GGATG 4 cut(s) 84, 360, 415, 460
Cac8I GCNNGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 57, 426
Csp6I GTAC 2 cut(s) 115, 549
CviAII CATG 2 cut(s) 20, 148
CviQI GTAC 2 cut(s) 115, 549
DdeI CTNAG 2 cut(s) 168, 566
DpnI GATC 5 cut(s) 14, 241, 272, 507, 598
DpnII GATC 5 cut(s) 12, 239, 270, 505, 596
EaeI YGGCCR 2 cut(s) 288, 438
Eam1104I CTCTTC 2 cut(s) 153, 261
EarI CTCTTC 2 cut(s) 153, 261
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 2 cut(s) 23, 151
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 476, 508
FaqI GGGAC 2 cut(s) 158, 343
FatI CATG 2 cut(s) 19, 147
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 5
FokI GGATG 4 cut(s) 71, 367, 402, 467
FriOI GRGCYC 1 cut(s) 167
FspBI CTAG 4 cut(s) 33, 69, 179, 378
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 3 cut(s) 290, 427, 440
Hin1II CATG 2 cut(s) 23, 151
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 89, 371
Hpy188III TCNNGA 6 cut(s) 33, 69, 97, 243, 496, 594
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 4 cut(s) 55, 230, 478, 502
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 168, 566
Hsp92II CATG 2 cut(s) 23, 151
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 5 cut(s) 12, 239, 270, 505, 596
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 9 cut(s) 63, 82, 127, 154, 180, 228, 374, 454, 572
LweI GCATC 2 cut(s) 445, 571
MaeI CTAG 4 cut(s) 33, 69, 179, 378
MaeIII GTNAC 1 cut(s) 576
MalI GATC 5 cut(s) 14, 241, 272, 507, 598
MboI GATC 5 cut(s) 12, 239, 270, 505, 596
MboII GAAGA 3 cut(s) 116, 170, 278
MflI RGATCY 2 cut(s) 239, 270
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 2 cut(s) 290, 440
MluCI AATT 1 cut(s) 518
MluNI TGGCCA 2 cut(s) 290, 440
MnlI CCTC 5 cut(s) 29, 93, 147, 443, 538
Mox20I TGGCCA 2 cut(s) 290, 440
MscI TGGCCA 2 cut(s) 290, 440
MseI TTAA 2 cut(s) 204, 365
Msp20I TGGCCA 2 cut(s) 290, 440
MspCI CTTAAG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 5 cut(s) 12, 239, 270, 505, 596
NlaIII CATG 2 cut(s) 23, 151
NlaIV GGNNCC 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 2 cut(s) 57, 426
PsuI RGATCY 2 cut(s) 239, 270
RsaI GTAC 2 cut(s) 116, 550
RsaNI GTAC 2 cut(s) 115, 549
SaqAI TTAA 2 cut(s) 204, 365
Sau3AI GATC 5 cut(s) 12, 239, 270, 505, 596
Sau96I GGNCC 2 cut(s) 57, 426
ScaI AGTACT 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 316, 391, 474, 494, 515, 556
SfaNI GCATC 2 cut(s) 445, 571
Sfr274I CTCGAG 1 cut(s) 496
SinI GGWCC 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 496
SmlI CTYRAG 2 cut(s) 203, 496
SmoI CTYRAG 2 cut(s) 203, 496
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 1 cut(s) 518
SsiI CCGC 1 cut(s) 586
SspI AATATT 1 cut(s) 261
SspMI CTAG 4 cut(s) 33, 69, 179, 378
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 4 cut(s) 15, 474, 497, 515
TasI AATT 1 cut(s) 518
TatI WGTACW 2 cut(s) 114, 548
Tru1I TTAA 2 cut(s) 204, 365
Tru9I TTAA 2 cut(s) 204, 365
TspDTI ATGAA 2 cut(s) 73, 297
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 57
XbaI TCTAGA 2 cut(s) 32, 68
XhoI CTCGAG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 4 cut(s) 33, 69, 179, 378
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.