Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9489148 .. 9490580

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACTCTTAAGTTATGGGACATCAATATGGATTCAGGTTCAGTCCAAACCTTCCAGGTTCATGAATATTTAAGACCTAAGCTGTGTGATTTATATGAGAACGACTCTATCTTCGATAAATTTGAGTGTTGTCTGAGTGGTGATGGATTGCGGGTGGCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTCTGCCACTGGTAGTACTGAGGCAACAACCTTGGAAGCCAGCAAAAATCCAATGAGGCGACAAGTTCAGACTCCTTCTAGGCCTTCCAGGTCCCTGAGCAGTAGTATAACACGAGTTGTCAGGCGTGGAGCAGAAAGCCCCGGGGTTGATGCAAATGGAAATTGTTATGATTTCACAACAAAGTTGCTGCACTTGGCATGGCATCCGAACGAGAACTCAATAGCCTGTGCCGCCGCTAACAGCTTGTACATGTACTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

153

Amino Acids

16.89

Weight (kDa)

6.81

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	151, 426, 429
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	3 cut(s)	211, 443, 449
AflII	CTTAAG	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	54, 281
AluBI	AGCT	2 cut(s)	82, 438
AluI	AGCT	2 cut(s)	82, 438
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	2 cut(s)	336, 337
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	56, 283
BcnI	CCSGG	2 cut(s)	336, 337
BfaI	CTAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	383, 426, 429
BlsI	GCNGC	3 cut(s)	384, 427, 430
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	4 cut(s)	56, 283, 336, 337
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	4 cut(s)	56, 283, 336, 337
BmsI	GCATC	2 cut(s)	334, 406
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
Bpu10I	CCTNAGC	2 cut(s)	78, 290
BpuMI	CCSGG	2 cut(s)	336, 337
BsaJI	CCNNGG	4 cut(s)	225, 334, 335, 336
Bse1I	ACTGG	2 cut(s)	166, 208
BseBI	CCWGG	2 cut(s)	56, 283
BseDI	CCNNGG	4 cut(s)	225, 334, 335, 336
BseGI	GGATG	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	125, 204, 281
BseNI	ACTGG	2 cut(s)	166, 208
BseXI	GCAGC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	32, 271
BsmFI	GGGAC	2 cut(s)	32, 271
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	441
BspACI	CCGC	3 cut(s)	151, 426, 429
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	3 cut(s)	126, 205, 282
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	166, 208
BssECI	CCNNGG	4 cut(s)	225, 334, 335, 336
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	56, 283
BstAFI	CTTAAG	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	78, 134, 213, 290
BstF5I	GGATG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 425
BstNI	CCWGG	2 cut(s)	56, 283
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	4 cut(s)	54, 281, 334, 335
BstV1I	GCAGC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	285
Cfr9I	CCCGGG	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	210, 442, 448
CviAII	CATG	3 cut(s)	62, 393, 445
CviJI	RGCY	7 cut(s)	82, 165, 233, 277, 333, 419, 438
CviKI_1	RGCY	7 cut(s)	82, 165, 233, 277, 333, 419, 438
CviQI	GTAC	3 cut(s)	210, 442, 448
DdeI	CTNAG	4 cut(s)	78, 134, 213, 290
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	54, 281
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	3 cut(s)	65, 396, 448
FaqI	GGGAC	2 cut(s)	32, 271
FatI	CATG	3 cut(s)	61, 392, 444
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	383, 426, 429
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	383, 426, 429
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	3 cut(s)	383, 426, 429
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	3 cut(s)	65, 396, 448
HinfI	GANTC	4 cut(s)	4, 32, 104, 265
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	135, 264, 402
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	61, 279, 288
HpyCH4V	TGCA	3 cut(s)	347, 385, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 425
HpyF3I	CTNAG	4 cut(s)	78, 134, 213, 290
Hsp92II	CATG	3 cut(s)	65, 396, 448
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	2 cut(s)	334, 406
MaeI	CTAG	1 cut(s)	273
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	2 cut(s)	119, 355
MlyI	GAGTC	2 cut(s)	98, 259
MnlI	CCTC	2 cut(s)	208, 243
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	2 cut(s)	9, 71
MslI	CAYNNNNRTG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	4 cut(s)	56, 283, 336, 337
MvaI	CCWGG	2 cut(s)	56, 283
MwoI	GCNNNNNNNGC	2 cut(s)	171, 425
NciI	CCSGG	2 cut(s)	336, 337
NlaIII	CATG	3 cut(s)	65, 396, 448
NlaIV	GGNNCC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	448
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	277
PciI	ACATGT	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	384, 427, 430
PleI	GAGTC	2 cut(s)	98, 259
PpsI	GAGTC	2 cut(s)	98, 259
PpuMI	RGGWCCY	1 cut(s)	285
PscI	ACATGT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	54, 281
PspGI	CCWGG	2 cut(s)	54, 281
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	285
PspPPI	RGGWCCY	1 cut(s)	285
RsaI	GTAC	3 cut(s)	211, 443, 449
RsaNI	GTAC	3 cut(s)	210, 442, 448
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	9, 71
SatI	GCNGC	3 cut(s)	383, 426, 429
Sau96I	GGNCC	1 cut(s)	285
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	2 cut(s)	98, 259
ScrFI	CCNGG	4 cut(s)	56, 283, 336, 337
SetI	ASST	8 cut(s)	40, 53, 60, 79, 84, 227, 287, 440
SfaNI	GCATC	2 cut(s)	334, 406
SinI	GGWCC	1 cut(s)	285
SmaI	CCCGGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	119, 355
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	151, 426, 429
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	4 cut(s)	54, 281, 334, 335
StyI	CCWWGG	1 cut(s)	225
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	119, 355
TatI	WGTACW	3 cut(s)	209, 441, 447
TauI	GCSGC	2 cut(s)	428, 431
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	9, 71
Tru9I	TTAA	2 cut(s)	9, 71
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	50, 78
TspGWI	ACGGA	1 cut(s)	173
TspMI	CCCGGG	1 cut(s)	335
TspRI	CASTG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	448
XmaI	CCCGGG	1 cut(s)	335
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.