pycom09g11280

Viral movement protein (MP)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
9539055 .. 9539432
378 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGCAATTCCTCTGATGAATATAGAGGATTCAGATTTATCTTTATCTCCTAGGCAAGTTGGTGAAAAATATCATCATGACCACATTAATCCTTTTTATAAGCCAAGATATTGGTATGAGAGAATTCTGATTGAATCTGAATTAGTTGATGTTGTTCGTAGATACATAAGTGAATTTAACAACATGATTGCTTTCTCCGAAATTCAGATACTAAAAATCATCTCCTTGGAAAAATGGGAAAATATATCCTACCACATTCAACAACACTCTAACCTTGATATGAGTCCTAGAGGCTACAATTTTTTGGATTACCAAAAGACGTGGGACATAGTTCTATGTTTCCAAAATATTCGTTACTCTCACACTTGGTATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

15.3

Weight (kDa)

5.81

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AcsI RAATTY 3 cut(s) 123, 173, 201
AgsI TTSAA 2 cut(s) 134, 260
AjiI CACGTC 1 cut(s) 321
ApoI RAATTY 3 cut(s) 123, 173, 201
AseI ATTAAT 1 cut(s) 87
AspA2I CCTAGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 50
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BfaI CTAG 3 cut(s) 51, 288, 376
BlnI CCTAGG 1 cut(s) 50
BmgBI CACGTC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 50, 225
BseDI CCNNGG 2 cut(s) 50, 225
BslFI GGGAC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 338
BspHI TCATGA 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 50, 225
BssT1I CCWWGG 2 cut(s) 50, 225
BstXI CCANNNNNNTGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 321
CciI TCATGA 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 302, 337
CviAII CATG 2 cut(s) 77, 184
CviJI RGCY 2 cut(s) 103, 294
CviKI_1 RGCY 2 cut(s) 103, 294
Eco130I CCWWGG 2 cut(s) 50, 225
EcoRI GAATTC 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 50, 225
ErhI CCWWGG 2 cut(s) 50, 225
FaeI CATG 2 cut(s) 80, 187
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 76, 183
FspBI CTAG 3 cut(s) 51, 288, 376
Hin1II CATG 2 cut(s) 80, 187
HinfI GANTC 3 cut(s) 29, 134, 283
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 6 cut(s) 15, 34, 129, 139, 199, 207
Hpy188III TCNNGA 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 2 cut(s) 80, 187
MaeI CTAG 3 cut(s) 51, 288, 376
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 353
MluCI AATT 6 cut(s) 6, 123, 140, 173, 201, 298
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 3 cut(s) 19, 21, 284
MseI TTAA 2 cut(s) 87, 177
NlaIII CATG 2 cut(s) 80, 187
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 2 cut(s) 29, 134
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
PshBI ATTAAT 1 cut(s) 87
PsiI TTATAA 1 cut(s) 99
SaqAI TTAA 2 cut(s) 87, 177
SchI GAGTC 1 cut(s) 292
SetI ASST 2 cut(s) 276, 323
SgeI CNNG 9 cut(s) 63, 68, 89, 117, 196, 238, 287, 300, 333
Sse9I AATT 6 cut(s) 6, 123, 140, 173, 201, 298
SspI AATATT 1 cut(s) 349
SspMI CTAG 3 cut(s) 51, 288, 376
StyI CCWWGG 2 cut(s) 50, 225
TaiI ACGT 1 cut(s) 323
TasI AATT 6 cut(s) 6, 123, 140, 173, 201, 298
TfiI GAWTC 2 cut(s) 29, 134
Tru1I TTAA 2 cut(s) 87, 177
Tru9I TTAA 2 cut(s) 87, 177
TspDTI ATGAA 1 cut(s) 32
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 3 cut(s) 123, 173, 201
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 3 cut(s) 51, 288, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.