Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10468917 .. 10469309

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGGAACAGAGAAACCGAAAGGTTCAGAACCACATCATCAAAAGCGCCATAGCCGCAGCGGAAGCATAAGCAGGAGCCTGAGCAGGGCAAGTTGGCGCATGGAAGAAGTATTTGCGACTGCCACGCACTCGAGAAGAAGCAGCCAAGCGGACGAAGACGAAGAAGCTCTGACATGGGCTGCCATTGAGAAACTGCCCACGTATGATCGGCTAAGAACAAGCATCATCAAGTCCCTTGGGGAAACTGAGCATCAAGGAGTACATAAGCAAGTAGACGTTCTACAGCTCGACATGGACGACCGTCAGAATTTCATTCAAAGGGTTTTCAAGGTTGCAGAGGAAGATAATGAGACGTTCCTGAAAAAGTTCAGAAGTAGACTTGATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

131

Amino Acids

15.14

Weight (kDa)

7.03

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	276, 379
AciI	CCGC	3 cut(s)	58, 63, 152
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	320, 331
AluBI	AGCT	2 cut(s)	170, 289
AluI	AGCT	2 cut(s)	170, 289
Alw26I	GTCTC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	60, 144, 182
ApoI	RAATTY	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	51, 102
AvaI	CYCGRG	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	72, 156, 169
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	4 cut(s)	58, 61, 145, 183
BlsI	GCNGC	4 cut(s)	59, 62, 146, 184
BmeT110I	CYCGRG	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	2 cut(s)	234, 262
BoxI	GACNNNNGTC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	74, 240
BseXI	GCAGC	3 cut(s)	72, 156, 169
Bsh1285I	CGRYCG	1 cut(s)	304
BsiEI	CGRYCG	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	3 cut(s)	58, 63, 152
BspCNI	CTCAG	2 cut(s)	75, 241
BspLI	GGNNCC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	83, 215, 249
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 102
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	208
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 66
BstPAI	GACNNNNGTC	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	72, 156, 169
BstV2I	GAAGAC	1 cut(s)	165
CfoI	GCGC	2 cut(s)	51, 102
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	3 cut(s)	103, 177, 295
CviJI	RGCY	7 cut(s)	57, 81, 147, 170, 182, 214, 289
CviKI_1	RGCY	7 cut(s)	57, 81, 147, 170, 182, 214, 289
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	3 cut(s)	83, 215, 249
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	3 cut(s)	106, 180, 298
FaiI	YATR	7 cut(s)	54, 71, 104, 178, 207, 267, 296
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	3 cut(s)	102, 176, 294
FblI	GTMKAC	2 cut(s)	276, 379
Fnu4HI	GCNGC	4 cut(s)	58, 61, 145, 183
Fsp4HI	GCNGC	4 cut(s)	58, 61, 145, 183
GlaI	GCGC	2 cut(s)	50, 101
GluI	GCNGC	4 cut(s)	58, 61, 145, 183
HaeII	RGCGCY	1 cut(s)	52
HhaI	GCGC	2 cut(s)	51, 102
Hin1II	CATG	3 cut(s)	106, 180, 298
Hin6I	GCGC	2 cut(s)	49, 100
HinP1I	GCGC	2 cut(s)	49, 100
Hpy166II	GTNNAC	2 cut(s)	277, 380
Hpy188I	TCNGA	4 cut(s)	31, 174, 309, 374
Hpy188III	TCNNGA	2 cut(s)	135, 361
Hpy8I	GTNNAC	2 cut(s)	277, 380
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	3 cut(s)	203, 279, 356
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 66
HpyF3I	CTNAG	3 cut(s)	83, 215, 249
HpySE526I	ACGT	3 cut(s)	203, 279, 356
Hsp92II	CATG	3 cut(s)	106, 180, 298
HspAI	GCGC	2 cut(s)	49, 100
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	4 cut(s)	61, 73, 95, 374
Lsp1109I	GCAGC	3 cut(s)	72, 156, 169
LweI	GCATC	2 cut(s)	234, 262
MaeII	ACGT	3 cut(s)	203, 279, 356
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	5 cut(s)	119, 150, 170, 176, 356
MluCI	AATT	1 cut(s)	310
MnlI	CCTC	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	57, 66
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	106, 180, 298
NlaIV	GGNNCC	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	59, 62, 146, 184
Ppu21I	YACGTR	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SatI	GCNGC	4 cut(s)	58, 61, 145, 183
Sau3AI	GATC	1 cut(s)	208
SetI	ASST	7 cut(s)	28, 172, 206, 282, 291, 336, 359
SfaNI	GCATC	2 cut(s)	234, 262
SfcI	CTRYAG	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	58, 63, 152
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	3 cut(s)	206, 282, 359
TaqI	TCGA	2 cut(s)	134, 291
TasI	AATT	1 cut(s)	310
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	60
TseI	GCWGC	3 cut(s)	60, 144, 182
TspDTI	ATGAA	1 cut(s)	304
XapI	RAATTY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	133
XmiI	GTMKAC	2 cut(s)	276, 379
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.