Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10884002 .. 10885658

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAACAATACAGCGAACTTTTTATACGTGACCTTGGCTACCTATCTTTCTACAACCTTATATCCCCTCCCTCCTTCGCAATCTTCAGTAGTAGCAAAGTGTTGCAATTTTCGAAAGATGGCTGGAATAGCATTTGGGAGATGTGACGATTCTTTCAGTTTGGGGTCGTTGAAGGCCTACCTTGCTGAGTTCATCTCTACTTTGCTATTTGTTTTTGCAGGACTTGGTTCAGCCATAGCTTACAACAAGTTGACATCCGATGCTACACTTGATCCTGCTGGGTTAGTAGCCATTGCCATTGCCCATGGCTTTGCTCTCTTTGTTGCAGTTTCAATTGGCGCCAACATCTCTGGAGGCCATGTAAACCCAGCTGTCACATTCGGATTGGCTCTTGGTGGACAAATCACCATCCTCACTGGCATCTTCTACTGGGTTGCCCAGCTTCTTGGTGCCATTGTTGCAGCCTTCATCCTCAAGTTCGTCACTGGAGGCTTGACAATCCCCACCCACAGTCTAGCTGCTGGAGTTGGAGCCATTGAAGGAGTAGTCTTTGAGATCGATCATCACCTTTGCATTGGTTTACACTGTCTATGCAACAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

202

Amino Acids

20.82

Weight (kDa)

6.56

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	54 - 186	7.7e-40	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	338, 449
AclWI	GGATC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	172, 333, 539
AluBI	AGCT	5 cut(s)	239, 371, 442, 518, 603
AluI	AGCT	5 cut(s)	239, 371, 442, 518, 603
AlwI	GGATC	1 cut(s)	266
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	174, 355
ApeKI	GCWGC	3 cut(s)	461, 518, 600
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	397, 557
AsuII	TTCGAA	1 cut(s)	112
BanI	GGYRCC	2 cut(s)	338, 449
BbvI	GCAGC	2 cut(s)	473, 505
BccI	CCATC	2 cut(s)	112, 416
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	3 cut(s)	462, 519, 601
BlsI	GCNGC	3 cut(s)	463, 520, 602
BmiI	GGNNCC	3 cut(s)	340, 451, 532
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	250, 429
BmuI	ACTGGG	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	3 cut(s)	372, 507, 543
Bpu14I	TTCGAA	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	33, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bse1I	ACTGG	3 cut(s)	421, 434, 490
Bse3DI	GCAATG	2 cut(s)	291, 297
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	33, 304
BseGI	GGATG	3 cut(s)	254, 408, 468
BseMI	GCAATG	2 cut(s)	291, 297
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	3 cut(s)	421, 434, 490
BseXI	GCAGC	2 cut(s)	473, 505
BseYI	CCCAGC	3 cut(s)	278, 367, 438
BshFI	GGCC	2 cut(s)	176, 357
BshNI	GGYRCC	2 cut(s)	338, 449
BshVI	ATCGAT	1 cut(s)	558
BsnI	GGCC	2 cut(s)	176, 357
Bsp119I	TTCGAA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	271, 555, 559
Bsp19I	CCATGG	1 cut(s)	304
BspANI	GGCC	2 cut(s)	176, 357
BspCNI	CTCAG	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	340, 451, 532
BspPI	GGATC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	112
BspT107I	GGYRCC	2 cut(s)	338, 449
BsrDI	GCAATG	2 cut(s)	291, 297
BsrI	ACTGG	3 cut(s)	421, 434, 490
BssECI	CCNNGG	2 cut(s)	33, 304
BssMI	GATC	3 cut(s)	271, 555, 559
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	33, 304
Bst4CI	ACNGT	2 cut(s)	512, 587
BstACI	GRCGYC	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	254, 408, 468
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	274, 558, 562
BstMBI	GATC	3 cut(s)	271, 555, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 182, 458, 600
BstV1I	GCAGC	2 cut(s)	473, 505
BstXI	CCANNNNNNTGG	1 cut(s)	446
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	176, 357
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	3 cut(s)	254, 408, 468
BtsIMutI	CAGTG	3 cut(s)	414, 483, 583
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	558
CviAII	CATG	2 cut(s)	305, 359
DdeI	CTNAG	1 cut(s)	186
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	3 cut(s)	273, 557, 561
DpnII	GATC	3 cut(s)	271, 555, 559
Eco130I	CCWWGG	2 cut(s)	33, 304
Eco147I	AGGCCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	33, 304
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	33, 304
FaeI	CATG	2 cut(s)	308, 362
FaiI	YATR	6 cut(s)	25, 61, 236, 306, 360, 592
FatI	CATG	2 cut(s)	304, 358
Fnu4HI	GCNGC	3 cut(s)	462, 519, 601
FokI	GGATG	3 cut(s)	241, 395, 455
Fsp4HI	GCNGC	3 cut(s)	462, 519, 601
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	3 cut(s)	462, 519, 601
GsaI	CCCAGC	3 cut(s)	282, 371, 442
GsuI	CTGGAG	3 cut(s)	372, 507, 543
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	176, 357
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	308, 362
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	2 cut(s)	397, 557
Hpy166II	GTNNAC	4 cut(s)	252, 364, 398, 581
Hpy188I	TCNGA	2 cut(s)	259, 383
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	4 cut(s)	252, 364, 398, 581
HpyAV	CCTTC	4 cut(s)	84, 166, 475, 533
HpyCH4III	ACNGT	2 cut(s)	512, 587
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	6 cut(s)	105, 218, 326, 461, 573, 594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 182, 458, 600
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	308, 362
HspAI	GCGC	1 cut(s)	339
KasI	GGCGCC	1 cut(s)	338
Kzo9I	GATC	3 cut(s)	271, 555, 559
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	2 cut(s)	473, 505
LweI	GCATC	2 cut(s)	250, 429
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	4 cut(s)	28, 143, 373, 481
MalI	GATC	3 cut(s)	273, 557, 561
MboI	GATC	3 cut(s)	271, 555, 559
MboII	GAAGA	2 cut(s)	75, 415
MfeI	CAATTG	1 cut(s)	333
MluCI	AATT	2 cut(s)	106, 333
Mly113I	GGCGCC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	6 cut(s)	77, 81, 347, 422, 482, 482
MspA1I	CMGCKG	2 cut(s)	371, 603
MunI	CAATTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	128, 182, 458, 600
NarI	GGCGCC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	271, 555, 559
NlaIII	CATG	2 cut(s)	308, 362
NlaIV	GGNNCC	3 cut(s)	340, 451, 532
NmuCI	GTSAC	4 cut(s)	28, 143, 373, 481
NspV	TTCGAA	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	463, 520, 602
PluTI	GGCGCC	1 cut(s)	342
Ppu21I	YACGTR	1 cut(s)	28
PspFI	CCCAGC	3 cut(s)	278, 367, 438
PspN4I	GGNNCC	3 cut(s)	340, 451, 532
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PstNI	CAGNNNCTG	1 cut(s)	603
PvuII	CAGCTG	2 cut(s)	371, 603
SatI	GCNGC	3 cut(s)	462, 519, 601
Sau3AI	GATC	3 cut(s)	271, 555, 559
SfaNI	GCATC	2 cut(s)	250, 429
SfoI	GGCGCC	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	106, 333
SseBI	AGGCCT	1 cut(s)	176
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	515
StuI	AGGCCT	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	33, 304
TaaI	ACNGT	2 cut(s)	512, 587
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	112, 558
TasI	AATT	2 cut(s)	106, 333
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	3 cut(s)	421, 490, 590
TseFI	GTSAC	4 cut(s)	28, 143, 373, 481
TseI	GCWGC	3 cut(s)	461, 518, 600
Tsp45I	GTSAC	4 cut(s)	28, 143, 373, 481
TspDTI	ATGAA	3 cut(s)	17, 181, 457
TspRI	CASTG	3 cut(s)	421, 490, 590
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.