Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11048370 .. 11048705

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCTCCACCTCCACCTGTATTTGCGATCCACCGCGCCATTTAATCACCTCAACCATCAACTTTTGAGGTCACTCTTCTTCTCCTCCTCCTACCCACCTTCTCTTAGACGCACCCACCCCTTGCTCTGCTGGTCACACTCTCCGCATTTCTCCTGTAAGTTCGTTACTCTATGTTGCTGGTTTATTAGTTCCAGTGTGCTTGTTTGGTTGCTGAGAAAGTTGGAGAGAACGCAAGAAAATGAGGGGAAATGCTGTCATTTTTTCTGTTCTTGGGAAAAATTGGAGGGAAGGACAGATCTGGATAGGATTGGGGTTTTTCGGTTTTCTGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

112

Amino Acids

13.19

Weight (kDa)

9.18

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	33, 143
AclWI	GGATC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	38
BccI	CCATC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	73, 76
Bsh1236I	CGCG	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	26, 295
BspACI	CCGC	2 cut(s)	33, 143
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	26, 295
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	104, 212
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	29, 298
BstMBI	GATC	2 cut(s)	26, 295
BstUI	CGCG	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	199
CfoI	GCGC	1 cut(s)	37
CseI	GACGC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	104, 212
DpnI	GATC	2 cut(s)	28, 297
DpnII	GATC	2 cut(s)	26, 295
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
FaiI	YATR	1 cut(s)	172
GlaI	GCGC	1 cut(s)	36
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	38
Hpy188III	TCNNGA	2 cut(s)	299, 327
HpyAV	CCTTC	2 cut(s)	108, 282
HpyF3I	CTNAG	2 cut(s)	104, 212
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	26, 295
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	29, 115, 163, 166, 205, 284, 312
MaeIII	GTNAC	3 cut(s)	69, 132, 163
MalI	GATC	2 cut(s)	28, 297
MboI	GATC	2 cut(s)	26, 295
MboII	GAAGA	2 cut(s)	67, 70
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	20, 59, 60, 94, 97, 235, 277
MseI	TTAA	1 cut(s)	42
MvnI	CGCG	1 cut(s)	35
NdeII	GATC	2 cut(s)	26, 295
NmuCI	GTSAC	2 cut(s)	69, 132
PsuI	RGATCY	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	26, 295
SetI	ASST	5 cut(s)	12, 18, 51, 71, 100
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	33, 143
TasI	AATT	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	69, 132
Tsp45I	GTSAC	2 cut(s)	69, 132
TspRI	CASTG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.