pycom09g12990

Regulator of Vps4 activity in the MVB pathway

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Reverse (-)
11543197 .. 11543415
219 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGCCGAGCATTTTCCTTCACACCAGATGTGCACGTGCACCCAAAGCTACCGGAGTACGATGAACTGGCAGCTCGAATTGCCGCTCTTAGAGGAATATAGAAGAAGGACAGCATTAGAAATTAAAGTCTGTAAAAGTTTACTTGGTGTCATCTTCTCTACATCTAATAGGAAATATTATTGGAGTTTGATATGTCTATTAACATCCATTAATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.57

Weight (kDa)

8.82

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 85
AciI CCGC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 36
AfaI GTAC 1 cut(s) 58
AluBI AGCT 2 cut(s) 48, 73
AluI AGCT 2 cut(s) 48, 73
Alw21I GWGCWC 2 cut(s) 35, 41
Alw44I GTGCAC 2 cut(s) 31, 37
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 2 cut(s) 31, 37
ApeKI GCWGC 1 cut(s) 70
AseI ATTAAT 1 cut(s) 210
BaeGI GKGCMC 2 cut(s) 35, 41
BbrPI CACGTG 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 35, 41
BbvI GCAGC 1 cut(s) 82
BisI GCNGC 2 cut(s) 71, 83
BlsI GCNGC 2 cut(s) 72, 84
BsaAI YACGTR 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 71
BseSI GKGCMC 2 cut(s) 35, 41
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 35, 41
BsiSI CCGG 1 cut(s) 52
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 35, 41
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 203
BstMWI GCNNNNNNNGC 2 cut(s) 45, 79
BstSLI GKGCMC 2 cut(s) 35, 41
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 203
Csp6I GTAC 1 cut(s) 57
CviJI RGCY 3 cut(s) 5, 48, 73
CviKI_1 RGCY 3 cut(s) 5, 48, 73
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 3
Eco72I CACGTG 1 cut(s) 36
FaiI YATR 2 cut(s) 99, 193
Fnu4HI GCNGC 2 cut(s) 71, 83
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 71, 83
GluI GCNGC 2 cut(s) 71, 83
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 52
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 3 cut(s) 33, 39, 140
Hpy8I GTNNAC 3 cut(s) 33, 39, 140
HpyAV CCTTC 2 cut(s) 27, 99
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 33, 39
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 79
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 1 cut(s) 35
LpnPI CCDG 3 cut(s) 38, 52, 65
Lsp1109I GCAGC 1 cut(s) 82
MaeII ACGT 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 85
MboII GAAGA 2 cut(s) 114, 145
MhlI GDGCHC 2 cut(s) 35, 41
MluCI AATT 2 cut(s) 77, 120
MnlI CCTC 1 cut(s) 85
MseI TTAA 3 cut(s) 123, 200, 210
MspI CCGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 45, 79
NmeAIII GCCGAG 1 cut(s) 31
PkrI GCNGC 2 cut(s) 72, 84
PmaCI CACGTG 1 cut(s) 36
PmlI CACGTG 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 210
PspCI CACGTG 1 cut(s) 36
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 123, 200, 210
SatI GCNGC 2 cut(s) 71, 83
SduI GDGCHC 2 cut(s) 35, 41
SetI ASST 3 cut(s) 38, 50, 75
SgeI CNNG 8 cut(s) 19, 37, 46, 48, 64, 79, 86, 155
Sse9I AATT 2 cut(s) 77, 120
SsiI CCGC 1 cut(s) 83
SspI AATATT 1 cut(s) 176
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 77, 120
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 123, 200, 210
Tru9I TTAA 3 cut(s) 123, 200, 210
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 77
VneI GTGCAC 2 cut(s) 31, 37
VspI ATTAAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.