Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11599996 .. 11600877

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAACAATTTGATAAATAGTTTGGGAAAGGAAGGTCGTATAGAAGATGCTATTAAGATTTTCAACGAGATGTCATCTTTGCATTGCACACCTAATGTGGTGACTTATAACACTGTAATCAAAGCATTATTTGAATCCAGAGCTCCAGCTTCGGAGGCAGTTACATGGTTTGAGAAGATGAAGCGGTATGAAGGTGCAAATGAGTTATTCCAAGAATTGAACGAAAACTGTGGTCGTTCAAGTGCTAGGGTGTATGGTGTGATGATTAAACATTTTGGGAAATGTGGGCGTCTTGATGACGCTTTGGATCTTTTTCACGAGGTGAAGAAAATCGGATGCACTCCAGGCGTGTATGCTTATAATGCATTCATGTCAGGGATGATGAGGACTGATATGACAGATGAAGCACATTCCTTGCTTGCAATCATGGAAGAAAAACAGCTAGGCTGCAAAGCTGATGAAAGGGATTCGAAAGGATTTGAATATGATCTCATTACTTACTCATCAATTCTTGAGGCGGTTGGCAAGGCCGATGATGTTCATAAGTCTTCCTCAATGGGACCTGGTATGATACTACTTTCTCTTCTTTCCCTAGTAAAATTGTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

204

Amino Acids

22.66

Weight (kDa)

5.59

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 44	2.1e-14	PPR repeat family
PPR	PF01535	2 - 27	5.6e-06	PPR repeat
PPR_3	PF13812	3 - 42	2.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	84 - 127	5.5e-09	PPR repeat family
PPR	PF01535	84 - 113	5.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	108, 360
AciI	CCGC	2 cut(s)	184, 518
AclWI	GGATC	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	289
AdeI	CACNNNGTG	1 cut(s)	322
AgsI	TTSAA	5 cut(s)	64, 134, 220, 240, 482
AjnI	CCWGG	2 cut(s)	343, 562
AluBI	AGCT	4 cut(s)	143, 149, 442, 455
AluI	AGCT	4 cut(s)	143, 149, 442, 455
Alw21I	GWGCWC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	112, 334
AsuII	TTCGAA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	345, 564
BfaI	CTAG	3 cut(s)	246, 443, 593
BisI	GCNGC	1 cut(s)	448
BlsI	GCNGC	1 cut(s)	449
Bme1390I	CCNGG	2 cut(s)	345, 564
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	2 cut(s)	345, 564
BmsI	GCATC	2 cut(s)	37, 326
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	2 cut(s)	129, 327
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	2 cut(s)	345, 564
BseGI	GGATG	2 cut(s)	341, 384
BseMI	GCAATG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	307, 487
BspACI	CCGC	2 cut(s)	184, 518
BspANI	GGCC	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	82
BssMI	GATC	2 cut(s)	307, 487
BssNI	GRCGYC	1 cut(s)	289
BssSI	CACGAG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	345, 564
Bst4CI	ACNGT	2 cut(s)	115, 230
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	341, 384
BstKTI	GATC	2 cut(s)	310, 490
BstMBI	GATC	2 cut(s)	307, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 345, 362
BstNI	CCWGG	2 cut(s)	345, 564
BstSCI	CCNGG	2 cut(s)	343, 562
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	341, 384
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	2 cut(s)	278, 308
CsiI	ACCWGGT	1 cut(s)	562
CviAII	CATG	3 cut(s)	165, 370, 427
CviJI	RGCY	6 cut(s)	143, 149, 442, 447, 455, 530
CviKI_1	RGCY	6 cut(s)	143, 149, 442, 447, 455, 530
DpnI	GATC	2 cut(s)	309, 489
DpnII	GATC	2 cut(s)	307, 487
DraIII	CACNNNGTG	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	343, 562
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	3 cut(s)	168, 373, 430
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	3 cut(s)	164, 369, 426
Fnu4HI	GCNGC	1 cut(s)	448
FokI	GGATG	2 cut(s)	348, 391
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	448
FspBI	CTAG	3 cut(s)	246, 443, 593
GluI	GCNGC	1 cut(s)	448
GsuI	CTGGAG	2 cut(s)	129, 327
HaeIII	GGCC	1 cut(s)	530
HgaI	GACGC	2 cut(s)	278, 308
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	168, 373, 430
HinfI	GANTC	2 cut(s)	134, 467
HphI	GGTGA	2 cut(s)	112, 334
Hpy188I	TCNGA	2 cut(s)	154, 335
Hpy188III	TCNNGA	4 cut(s)	138, 293, 317, 512
HpyAV	CCTTC	2 cut(s)	26, 185
HpyCH4III	ACNGT	2 cut(s)	115, 230
HpyCH4V	TGCA	7 cut(s)	82, 87, 197, 339, 365, 422, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 345, 362
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	168, 373, 430
Kzo9I	GATC	2 cut(s)	307, 487
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	151, 159, 330, 357, 360, 549, 576
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	37, 326
MabI	ACCWGGT	1 cut(s)	562
MaeI	CTAG	3 cut(s)	246, 443, 593
MaeIII	GTNAC	2 cut(s)	100, 160
MalI	GATC	2 cut(s)	309, 489
MboI	GATC	2 cut(s)	307, 487
MboII	GAAGA	6 cut(s)	56, 187, 337, 443, 540, 575
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	7, 215, 507, 599
MnlI	CCTC	5 cut(s)	148, 313, 378, 508, 562
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	2 cut(s)	54, 267
MspR9I	CCNGG	2 cut(s)	345, 564
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	345, 564
MwoI	GCNNNNNNNGC	3 cut(s)	155, 345, 362
NdeII	GATC	2 cut(s)	307, 487
NlaIII	CATG	3 cut(s)	168, 373, 430
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	470
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	134, 467
PkrI	GCNGC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	560
PsiI	TTATAA	2 cut(s)	108, 360
Psp124BI	GAGCTC	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	343, 562
PspGI	CCWGG	2 cut(s)	343, 562
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	54, 267
SatI	GCNGC	1 cut(s)	448
Sau3AI	GATC	2 cut(s)	307, 487
Sau96I	GGNCC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	345, 564
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	9 cut(s)	37, 94, 145, 151, 196, 324, 444, 457, 565
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	37, 326
SfuI	TTCGAA	1 cut(s)	470
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	7, 215, 507, 599
SsiI	CCGC	2 cut(s)	184, 518
SspMI	CTAG	3 cut(s)	246, 443, 593
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	343, 562
TaaI	ACNGT	2 cut(s)	115, 230
TaqI	TCGA	1 cut(s)	470
TasI	AATT	4 cut(s)	7, 215, 507, 599
TfiI	GAWTC	2 cut(s)	134, 467
Tru1I	TTAA	2 cut(s)	54, 267
Tru9I	TTAA	2 cut(s)	54, 267
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	7 cut(s)	17, 194, 204, 358, 417, 474, 530
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	560
XspI	CTAG	3 cut(s)	246, 443, 593
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.